Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq17436 136 3e-27 seq17438 96.9 3e-15 seq17440 95.1 9e-15 seq17434 93.3 3e-14 >seq17436 Length=11997470 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| ||||| ||| ||| || || || ||||||||||| ||| | || Sbjct 6692157 AGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6692098 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| ||||| | ||||| ||||||| Sbjct 6692097 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6692038 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6692037 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTG 6691978 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || ||||||||||| Sbjct 6691977 ATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| || || ||||||||||| ||| | || Sbjct 6692385 AGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6692326 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| ||||| | ||||| ||||||| Sbjct 6692325 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6692266 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6692265 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTG 6692206 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 6692205 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| || || ||||||||||| ||| | || Sbjct 6692841 AGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6692782 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 6692781 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6692722 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6692721 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTG 6692662 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| || || |||||||| Sbjct 6692661 ATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || |||||||||||||| ||| | || Sbjct 6692613 AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGT 6692554 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 6692553 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6692494 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6692493 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTG 6692434 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 6692433 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||||||||| ||| | || Sbjct 6693069 AGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6693010 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| ||||| | ||||| ||||||| Sbjct 6693009 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6692950 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6692949 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTG 6692890 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 6692889 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||||||||| ||| | || Sbjct 6693297 AGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6693238 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 6693237 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6693178 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6693177 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTG 6693118 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| || || |||||||| Sbjct 6693117 ATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||||||||| ||| | || Sbjct 6693525 AGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGT 6693466 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 6693465 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 6693406 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 6693405 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTG 6693346 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 6693345 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||||||||| ||| | || | || |||| |||||| ||||| || Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| ||||| | ||||| |||||||||||| ||||| || ||| Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||||||||||| || || || || || |||||||| || || Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 6693547 GAAGATCTGCAT 6693536 >seq17438 Length=17193109 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| ||| || || || ||||| || || || | || Sbjct 16961290 AGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 16961349 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| |||| ||||| ||||| | ||||| |||||| Sbjct 16961350 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 16961409 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||||| || Sbjct 16961410 TTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTG 16961469 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || || | || || ||||| || ||||| || Sbjct 16961470 ATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGT 16961510 >seq17440 Length=24565398 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || || ||| || ||||| || || || || Sbjct 435309 CCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435368 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || |||||||| || ||||| || || || |||||||| || | ||| Sbjct 435369 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGG 435428 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || || | | || || || | || ||| Sbjct 435429 ATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACC 435488 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 435489 TCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 435535 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || || ||| || ||||| || || || || Sbjct 435765 CCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435824 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || |||||||| || ||||| || || || |||||||| || | ||| Sbjct 435825 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGG 435884 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || || | | || || || | || ||| Sbjct 435885 ATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACC 435944 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 435945 TCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 435991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || ||| || ||||| || || || || Sbjct 435537 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435596 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || ||||| |||| |||||||||||| | ||| Sbjct 435597 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 435656 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||| || || ||| | | || || | |||||| Sbjct 435657 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACT 435716 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||| || |||||||| |||||||| Sbjct 435717 TCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 435763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || ||| || ||||| || || || || Sbjct 435993 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 436052 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || ||||| |||| |||||||||||| | ||| Sbjct 436053 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 436112 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||| || || ||| | | || || | |||||| Sbjct 436113 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACT 436172 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||| || |||||||| |||||||| Sbjct 436173 TCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 436219 >seq17434 Length=8399593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | || |||||| ||||| ||||||||||| ||| | ||| Sbjct 1558158 AGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGA 1558099 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| || | ||||| ||||| | |||| || || Sbjct 1558098 CCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCT 1558039 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || |||| || ||||| | || Sbjct 1558038 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTG 1557979 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||| | ||||| || || || |||||||| Sbjct 1557978 ATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCATCGT 1557938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380856631713120