Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 212 1e-49
seq17434 84.2 4e-11
>seq17439
Length=18325388
Score = 212 bits (234), Expect = 1e-49
Identities = 547/825 (66%), Gaps = 15/825 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || |||||| | |||||||| || || || || || ||||| || || | ||
Sbjct 9056301 CTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTC 9056360
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACAC----CCGTGTCAGGCCCATCTGTTCCA 47954
|||||| || || || ||||||||| | ||| || || | || |||
Sbjct 9056361 CATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGA--CA--CCGAGCTCCACCA 9056416
Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
|| | |||| || ||| |||| || |||| ||||| || | |||||||| || |
Sbjct 9056417 ACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCA 9056476
Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
| || |||||||| | ||||||||||||| ||| || ||| || ||| || |
Sbjct 9056477 GATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGA 9056536
Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAG 48133
||| | | ||| | | | || | ||| | ||||||| | | | |||
Sbjct 9056537 TCTCAATGATGCGTT-CACGGCTGGGACGCTGCACCAGGTGCTGGA---ACATCATAACC 9056592
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| | |||| || || || ||| ||||||| |||| ||||| |||||
Sbjct 9056593 GCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCG 9056652
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | || ||| |||||||| || | || ||| ||| |||||||||
Sbjct 9056653 GGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATG 9056712
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
|| || || || ||||| || | | | ||| || || || |||| ||| |||
Sbjct 9056713 CCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATC 9056772
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
|| || ||||||||||| ||||| ||| | ||||| || || || || ||||
Sbjct 9056773 CAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAG 9056832
Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
|| | | || || | | || | ||| || || ||| |||||||||
Sbjct 9056833 AGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCT 9056892
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
||||| |||||||| || || ||||| || || |||||| | ||||| | ||||
Sbjct 9056893 GAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGC 9056952
Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553
||||| | || | ||| | ||||||||| || || || ||||| || || || |||
Sbjct 9056953 ACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAG 9057012
Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC-AGCCCTG 48612
|| || | |||||| || |||||| ||||| |||| || | ||| | || || ||
Sbjct 9057013 AAAGCCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTA-AGCGTACCCAGTCCGT 9057071
Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| ||| ||| || ||||| || |||||||||||||| || ||
Sbjct 9057072 CATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGC 9057116
>seq17434
Length=8399593
Score = 84.2 bits (92), Expect = 4e-11
Identities = 216/323 (67%), Gaps = 7/323 (2%)
Strand=Plus/Plus
Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772
|||||| || |||| || | | || |||| |||||| || | || || |||||
Sbjct 1623378 CTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACA 1623437
Query 213773 GG-ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831
||| ||| ||||| ||| ||| ||| | | || ||| | | ||| ||||| |
Sbjct 1623438 CTTATGTGGG-CACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGAT 1623496
Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891
| || | ||| | || ||||| || | | || ||| || || | |||||
Sbjct 1623497 CAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTT 1623556
Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951
| || ||| | ||| || || || |||| ||||||||||||| ||||||||||| |
Sbjct 1623557 TCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATG 1623616
Query 213952 CGCCCGGCCTCTT---GCCGCCCTGGTCCAC-CAGCCTGGCCACCATGTTGAAGATGCGC 214007
| ||||| | ||| ||| ||||| ||||| ||| | ||||| | ||||| | |||
Sbjct 1623617 CACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGT-GCCACATTATTGAATACACGC 1623675
Query 214008 AGGACGGGTACCAGCCCGTTGGA 214030
|| | || |||||||| || ||
Sbjct 1623676 AGCATTGGCACCAGCCCATTCGA 1623698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931329725849600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |