Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq17439 212 1e-49 seq17434 84.2 4e-11 >seq17439 Length=18325388 Score = 212 bits (234), Expect = 1e-49 Identities = 547/825 (66%), Gaps = 15/825 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || |||||| | |||||||| || || || || || ||||| || || | || Sbjct 9056301 CTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTC 9056360 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACAC----CCGTGTCAGGCCCATCTGTTCCA 47954 |||||| || || || ||||||||| | ||| || || | || ||| Sbjct 9056361 CATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGA--CA--CCGAGCTCCACCA 9056416 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || | |||| || ||| |||| || |||| ||||| || | |||||||| || | Sbjct 9056417 ACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCA 9056476 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | || |||||||| | ||||||||||||| ||| || ||| || ||| || | Sbjct 9056477 GATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGA 9056536 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAG 48133 ||| | | ||| | | | || | ||| | ||||||| | | | ||| Sbjct 9056537 TCTCAATGATGCGTT-CACGGCTGGGACGCTGCACCAGGTGCTGGA---ACATCATAACC 9056592 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | |||| || || || ||| ||||||| |||| ||||| ||||| Sbjct 9056593 GCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCG 9056652 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || ||| |||||||| || | || ||| ||| ||||||||| Sbjct 9056653 GGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATG 9056712 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || ||||| || | | | ||| || || || |||| ||| ||| Sbjct 9056713 CCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATC 9056772 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || || ||||||||||| ||||| ||| | ||||| || || || || |||| Sbjct 9056773 CAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAG 9056832 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | | || || | | || | ||| || || ||| ||||||||| Sbjct 9056833 AGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCT 9056892 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| |||||||| || || ||||| || || |||||| | ||||| | |||| Sbjct 9056893 GAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGC 9056952 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 ||||| | || | ||| | ||||||||| || || || ||||| || || || ||| Sbjct 9056953 ACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAG 9057012 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC-AGCCCTG 48612 || || | |||||| || |||||| ||||| |||| || | ||| | || || || Sbjct 9057013 AAAGCCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTA-AGCGTACCCAGTCCGT 9057071 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || |||||||||||||| || || Sbjct 9057072 CATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGC 9057116 >seq17434 Length=8399593 Score = 84.2 bits (92), Expect = 4e-11 Identities = 216/323 (67%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772 |||||| || |||| || | | || |||| |||||| || | || || ||||| Sbjct 1623378 CTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACA 1623437 Query 213773 GG-ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831 ||| ||| ||||| ||| ||| ||| | | || ||| | | ||| ||||| | Sbjct 1623438 CTTATGTGGG-CACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGAT 1623496 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891 | || | ||| | || ||||| || | | || ||| || || | ||||| Sbjct 1623497 CAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTT 1623556 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 | || ||| | ||| || || || |||| ||||||||||||| ||||||||||| | Sbjct 1623557 TCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATG 1623616 Query 213952 CGCCCGGCCTCTT---GCCGCCCTGGTCCAC-CAGCCTGGCCACCATGTTGAAGATGCGC 214007 | ||||| | ||| ||| ||||| ||||| ||| | ||||| | ||||| | ||| Sbjct 1623617 CACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGT-GCCACATTATTGAATACACGC 1623675 Query 214008 AGGACGGGTACCAGCCCGTTGGA 214030 || | || |||||||| || || Sbjct 1623676 AGCATTGGCACCAGCCCATTCGA 1623698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931329725849600