Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq17439 143 5e-29 seq17434 120 6e-22 >seq17439 Length=18325388 Score = 143 bits (158), Expect = 5e-29 Identities = 362/529 (68%), Gaps = 26/529 (5%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGG-TACGCTCTATCC 25569 |||||| | || ||| | ||||| ||||||||||| |||| |||| |||||| || | Sbjct 9057108 CTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATG-ACGGACTGGGTACGCT-TAACA 9057051 Query 25570 AAAGACGAGCAGCATTT--TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627 | | |||| ||||| | ||| | |||||||| ||||| || ||||| ||||| | Sbjct 9057050 GACAATGAGCGTCATTTCATTTCACAT--GTGTTGGCTTTCTTCGCCGCCTCCGATGGCA 9056993 Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAA 25685 | || |||||||||||| ||| | || | | |||||||||| ||| ||||| Sbjct 9056992 TTGTTAACGAGAATCTGGTTGAGCGCTTTAGCCAGGAAGTGCAGATTAC--AGAGGCGCG 9056935 Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745 || ||||| ||||| ||||| ||||| || ||||| ||||| ||| |||| || | Sbjct 9056934 CTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAGATGTA---CAGTGT 9056878 Query 25746 TCTGAT---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCG 25801 || || || || || ||| | || | || | ||| || || ||| || | Sbjct 9056877 GCTAATCGACACTTATATCCGAGATCCTCATC-AGCGCGATTATCTCTTCAATGCTATTG 9056819 Query 25802 AGCACATACCCAGC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG 25860 | ||| || || | ||| | |||||| ||||| | ||||| || ||| Sbjct 9056818 A-AACAATGCCGGCTGTAAAGCGTAAGGCGGACTGGGCGCTCTCTTGGAT-TTCATCCAA 9056761 Query 25861 AGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAG 25919 || || | ||||| ||||| | | ||||| ||||| || || |||||||| || || Sbjct 9056760 GGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTCGAAGGCATCTTCTTTAG 9056701 Query 25920 CGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTT 25979 ||| ||||| ||||||||||||| || || || |||||||| ||| |||| Sbjct 9056700 CGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTAATGCCCGGTCTG-ACTT 9056642 Query 25980 T-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 | || |||||||||||| | | || ||||| || || | || ||||| Sbjct 9056641 TCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGACTTTGC 9056593 >seq17434 Length=8399593 Score = 120 bits (132), Expect = 6e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040 ||||| |||||| | || |||||||| ||| | || ||| ||| ||| | | | Sbjct 1623427 AGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTC 1623486 Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACG 222100 || || || || || ||||| | || | ||| || || | | ||| |||||||| | Sbjct 1623487 ATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTG 1623546 Query 222101 CCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAG 222160 || |||||||| ||| ||||| ||| || || || || | ||||||||||||| |||| Sbjct 1623547 CCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAG 1623606 Query 222161 ACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 | ||| | || || |||||||| ||||||||||||||| Sbjct 1623607 ATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCAC 1623647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928642311833600