Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 143 5e-29
seq17434 120 6e-22
>seq17439
Length=18325388
Score = 143 bits (158), Expect = 5e-29
Identities = 362/529 (68%), Gaps = 26/529 (5%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGG-TACGCTCTATCC 25569
|||||| | || ||| | ||||| ||||||||||| |||| |||| |||||| || |
Sbjct 9057108 CTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATG-ACGGACTGGGTACGCT-TAACA 9057051
Query 25570 AAAGACGAGCAGCATTT--TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627
| | |||| ||||| | ||| | |||||||| ||||| || ||||| ||||| |
Sbjct 9057050 GACAATGAGCGTCATTTCATTTCACAT--GTGTTGGCTTTCTTCGCCGCCTCCGATGGCA 9056993
Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAA 25685
| || |||||||||||| ||| | || | | |||||||||| ||| |||||
Sbjct 9056992 TTGTTAACGAGAATCTGGTTGAGCGCTTTAGCCAGGAAGTGCAGATTAC--AGAGGCGCG 9056935
Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745
|| ||||| ||||| ||||| ||||| || ||||| ||||| ||| |||| || |
Sbjct 9056934 CTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAGATGTA---CAGTGT 9056878
Query 25746 TCTGAT---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCG 25801
|| || || || || ||| | || | || | ||| || || ||| || |
Sbjct 9056877 GCTAATCGACACTTATATCCGAGATCCTCATC-AGCGCGATTATCTCTTCAATGCTATTG 9056819
Query 25802 AGCACATACCCAGC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG 25860
| ||| || || | ||| | |||||| ||||| | ||||| || |||
Sbjct 9056818 A-AACAATGCCGGCTGTAAAGCGTAAGGCGGACTGGGCGCTCTCTTGGAT-TTCATCCAA 9056761
Query 25861 AGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAG 25919
|| || | ||||| ||||| | | ||||| ||||| || || |||||||| || ||
Sbjct 9056760 GGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTCGAAGGCATCTTCTTTAG 9056701
Query 25920 CGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTT 25979
||| ||||| ||||||||||||| || || || |||||||| ||| ||||
Sbjct 9056700 CGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTAATGCCCGGTCTG-ACTT 9056642
Query 25980 T-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027
| || |||||||||||| | | || ||||| || || | || |||||
Sbjct 9056641 TCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGACTTTGC 9056593
>seq17434
Length=8399593
Score = 120 bits (132), Expect = 6e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040
||||| |||||| | || |||||||| ||| | || ||| ||| ||| | | |
Sbjct 1623427 AGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTC 1623486
Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACG 222100
|| || || || || ||||| | || | ||| || || | | ||| |||||||| |
Sbjct 1623487 ATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTG 1623546
Query 222101 CCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAG 222160
|| |||||||| ||| ||||| ||| || || || || | ||||||||||||| ||||
Sbjct 1623547 CCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAG 1623606
Query 222161 ACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201
| ||| | || || |||||||| |||||||||||||||
Sbjct 1623607 ATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCAC 1623647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928642311833600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |