Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_019716.1
Length=44510
Score E
Sequences producing significant alignments: (Bits) Value
seq11536 1590 0.0
>seq11536
Length=2982
Score = 1590 bits (1762), Expect = 0.0
Identities = 969/1026 (94%), Gaps = 1/1026 (0%)
Strand=Plus/Plus
Query 15637 GTGAGCCGTAATTATCATCTTCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 15696
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016
Query 15697 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAGCCAGCATACAGCAACAAC 15756
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076
Query 15757 ATGGCCTGGTGTCTGTGGGATATGCTGACCCACCCGCGCTACGGCATGGGTAAACGTCTT 15816
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136
Query 15817 GGTGCGGCAGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTGTTGCGACCAGTCG 15876
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196
Query 15877 GTGCCGGACGGTTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCCTGGCTGACCACA 15936
||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256
Query 15937 CAGCGTAAGGCGTGGGATGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 15996
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316
Query 15997 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCATCAGATAAGGTGTGGACCTAT 16056
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376
Query 16057 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436
Query 16117 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGGATAACGGCTGGGAG 16176
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496
Query 16177 ACGGCGACAGAGCTTGTGGAGGACACGCAAGCCATTGCCCGTTACGGTCGTAACGTCACG 16236
||||||||||||||||| || || ||||| ||||||||||||||||||||||| || |||
Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556
Query 16237 AAGATGGATGCCTTTGGCTGTACCAGGCGGGGGCAGGCGCACCGCGCCGGGCTGTGGCTG 16296
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616
Query 16297 ATTAAAACGGAACTGCTGGAGACGCAGACCGTGGACTTCAGCGTGGGTGCCGAAGGGCTT 16356
|||||||| ||||||||||| |||||||||||||| |||||||| || || |||||||||
Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676
Query 16357 CGCCATGTGCCGGGCGATGTTATTGAAATCTGTGATGATGACTATGCCGGTATCAGCACC 16416
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736
Query 16417 GGCGGGCGCGTGCTGGCGGTGAACAGCCAGACGCGGACACTGACGCTCGACCGTGAAATC 16476
|| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796
Query 16477 ACGCTGCCATCCTCCGGCACCACGCTGATAAGCCTGGTTGACGGGCAGGGTAATCCGGTG 16536
||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||
Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856
Query 16537 AGCGTGGAGGTCCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 16596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916
Query 16597 GGCGTTGCCGGATACAGCGTATGGGGGCTGAAGCTGCCGACGCTGCGCCAGCGCCTGTTC 16656
|| ||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976
Query 16657 CGCTGC 16662
||||||
Sbjct 2977 CGCTGC 2982
Score = 930 bits (1030), Expect = 0.0
Identities = 588/634 (93%), Gaps = 2/634 (0%)
Strand=Plus/Plus
Query 15649 TATCATCTT-CGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 15707
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60
Query 15708 ATACAGCGGTATCTGGGACGGAACGTTTAAGCCAGCATACAGCAACAACATGGCCTGGTG 15767
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120
Query 15768 TCTGTGGGATATGCTGACCCACCCGCGCTACGGCATGGGTAAACGTCTTGGTGCGGCAGA 15827
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180
Query 15828 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTGTTGCGACCAGTCGGTGCCGGACGG 15887
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240
Query 15888 TTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCCTGGCTGACCACACAGCGTAAGGC 15947
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300
Query 15948 GTGGGATGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16006
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360
Query 16007 AGACGCTGACGTTCGTGCAGGACCGACCATCAGATAAGGTGTGGACCTATAACCGCAGTA 16066
||||||||||||||||||| |||||||| || |||||| |||||||||||||| | ||
Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420
Query 16067 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16126
||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480
Query 16127 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGGATAACGGCTGGGAGACGGCGACAG 16186
|||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540
Query 16187 AGCTTGTGGAGGACACGCAAGCCATTGCCCGTTACGGTCGTAACGTCACGAAGATGGATG 16246
||||||| || | ||||| ||||||||| ||||| ||||||| || || ||||||||||
Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600
Query 16247 CCTTTGGCTGTACCAGGCGGGGGCAGGCGCACCG 16280
|||||||||||||||| ||||||||||| |||||
Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 142280927516160
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