Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq11536 1842 0.0 >seq11536 Length=2982 Score = 1842 bits (2042), Expect = 0.0 Identities = 1025/1026 (99%), Gaps = 1/1026 (0%) Strand=Plus/Plus Query 16009 GTGAGCCGTAATTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 16068 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016 Query 16069 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 16128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076 Query 16129 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 16188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136 Query 16189 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 16248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196 Query 16249 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 16308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256 Query 16309 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 16368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316 Query 16369 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 16428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376 Query 16429 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436 Query 16489 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 16548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496 Query 16549 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 16608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556 Query 16609 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 16668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616 Query 16669 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 16728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676 Query 16729 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 16788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736 Query 16789 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 16848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796 Query 16849 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 16908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856 Query 16909 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 16968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916 Query 16969 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 17028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976 Query 17029 CGCTGC 17034 |||||| Sbjct 2977 CGCTGC 2982 Score = 1056 bits (1170), Expect = 0.0 Identities = 616/634 (97%), Gaps = 2/634 (0%) Strand=Plus/Plus Query 16021 TATCATCT-GCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 16079 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 16080 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 16139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 16140 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 16200 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 16260 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 16319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 16320 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16378 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 16379 AGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTA 16438 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 16439 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16498 ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||| Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480 Query 16499 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAG 16558 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540 Query 16559 AGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATG 16618 ||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||| Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600 Query 16619 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 16652 |||||||||||||||||||||||||||||||||| Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150535217698560