Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_019723.1
Length=47090
Score E
Sequences producing significant alignments: (Bits) Value
seq11536 1842 0.0
>seq11536
Length=2982
Score = 1842 bits (2042), Expect = 0.0
Identities = 1025/1026 (99%), Gaps = 1/1026 (0%)
Strand=Plus/Plus
Query 16009 GTGAGCCGTAATTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 16068
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016
Query 16069 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 16128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076
Query 16129 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 16188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136
Query 16189 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 16248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196
Query 16249 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 16308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256
Query 16309 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 16368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316
Query 16369 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 16428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376
Query 16429 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436
Query 16489 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 16548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496
Query 16549 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 16608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556
Query 16609 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 16668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616
Query 16669 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 16728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676
Query 16729 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 16788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736
Query 16789 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 16848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796
Query 16849 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 16908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856
Query 16909 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 16968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916
Query 16969 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 17028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976
Query 17029 CGCTGC 17034
||||||
Sbjct 2977 CGCTGC 2982
Score = 1056 bits (1170), Expect = 0.0
Identities = 616/634 (97%), Gaps = 2/634 (0%)
Strand=Plus/Plus
Query 16021 TATCATCT-GCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 16079
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60
Query 16080 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 16139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120
Query 16140 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180
Query 16200 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240
Query 16260 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 16319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300
Query 16320 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16378
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360
Query 16379 AGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTA 16438
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420
Query 16439 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16498
||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480
Query 16499 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAG 16558
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540
Query 16559 AGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATG 16618
||||||||||| ||||||| ||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600
Query 16619 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 16652
||||||||||||||||||||||||||||||||||
Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150535217698560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |