Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq17434 93.3 4e-14 seq17440 91.5 1e-13 >seq17434 Length=8399593 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | |||||||| ||||| || || ||||| || Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || ||| |||||||| ||| | || |||||| Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| ||||| |||||||||||| | ||| | | ||||| ||| Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||| || || ||||| |||| Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGT 1558149 >seq17440 Length=24565398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || |||||||| || || || ||||| || || |||||||| Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | ||| || || ||||| |||||| | ||| ||| || Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | || ||||| || || ||||| ||||||||| | || || |||| ||||| Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| || || || ||||| ||| |||| Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| ||||| || || || ||||| || ||| ||| || Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| || | ||||||||||| || || | || ||| | || || |||| ||||| Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| || || || ||||| ||| |||| Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435555 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || |||||||| || || || ||||| || || |||||||| Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | ||| || || ||||| |||||| | ||| ||| || Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | || ||||| || || ||||| ||||||||| | || || |||| ||||| Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| || || || ||||| ||| |||| Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435783 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || |||||||| ||||| || || || ||||| || ||| ||| || Sbjct 436222 AATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCC 436163 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || | | || ||||| ||||| ||||| |||||| | || |||| Sbjct 436162 AGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAT 436103 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| || | ||||||||||| || || | || ||| | || || |||| ||| Sbjct 436102 CAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTAT 436043 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || || ||||| ||| |||| Sbjct 436042 AACATTCAGAAGGAGTCGACTCTCCACTTGGT 436011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425314380209760