Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17438 96.9 4e-15 >seq17438 Length=17193109 Score = 96.9 bits (106), Expect = 4e-15 Identities = 260/393 (66%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 13540 GTCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATC 13599 ||||||||||| |||||||||||| | || || || ||| ||||||| || | | || Sbjct 4178139 GTCCAAAATTAAGGGTATTCCCAAGCTAGAGGATGCCAACGAGGCGGGCACCAAAAACTC 4178080 Query 13600 TGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGG 13659 | | || || || || |||| |||||||| ||||| ||| || | || || | || Sbjct 4178079 CATACAATGCACGCTTATCCTCACCGAGGGTGACTCGGCAAAATCCTTGGCCGTCTCCGG 4178020 Query 13660 TCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAA 13719 || ||| ||||||| | | ||||| ||||| || || ||||||||| || Sbjct 4178019 CCTGGGCGTCATTGGTCGCAACTATTACGGCGTGTTTCCGCTGCGCGGTAAACTACTCAA 4177960 Query 13720 TGTTCGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAA 13779 ||| || || || | | || || || || ||| |||| |||| || Sbjct 4177959 TGTGCGCGAGGCCACTTTCAAGCAACTGACCGAGAATGCCGAGATCAATAATCTGTGCAA 4177900 Query 13780 GATCCTTGGTCTTCA--ACAAG--GAAA----AGACTACCAAGATGTTTCTGAA----CT 13827 |||| |||| || || | ||| |||| || || | |||| |||||| || Sbjct 4177899 GATCATTGGACTGCAGTATAAGAAGAAATATTTGAGTATC--GATG-ATCTGAAGACGCT 4177843 Query 13828 TCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGG 13887 ||||||||| | ||||| ||||| ||| || | |||||||| ||||| ||||| Sbjct 4177842 TCGCTATGGCAAGGTGATGATCATGACTGATCAGGACCAGGATGGTTCCCACATTAAGGG 4177783 Query 13888 TCTCATCCTAAATATGATCCACTACTTCTGGCC 13920 ||| || | ||| | || ||| | |||||| Sbjct 4177782 TCTGCTCATCAATTTTATACACACCAACTGGCC 4177750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596439547827200