Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq17438 96.9 4e-15
>seq17438
Length=17193109
Score = 96.9 bits (106), Expect = 4e-15
Identities = 260/393 (66%), Gaps = 15/393 (4%)
Strand=Plus/Minus
Query 13540 GTCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATC 13599
||||||||||| |||||||||||| | || || || ||| ||||||| || | | ||
Sbjct 4178139 GTCCAAAATTAAGGGTATTCCCAAGCTAGAGGATGCCAACGAGGCGGGCACCAAAAACTC 4178080
Query 13600 TGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGG 13659
| | || || || || |||| |||||||| ||||| ||| || | || || | ||
Sbjct 4178079 CATACAATGCACGCTTATCCTCACCGAGGGTGACTCGGCAAAATCCTTGGCCGTCTCCGG 4178020
Query 13660 TCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAA 13719
|| ||| ||||||| | | ||||| ||||| || || ||||||||| ||
Sbjct 4178019 CCTGGGCGTCATTGGTCGCAACTATTACGGCGTGTTTCCGCTGCGCGGTAAACTACTCAA 4177960
Query 13720 TGTTCGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAA 13779
||| || || || | | || || || || ||| |||| |||| ||
Sbjct 4177959 TGTGCGCGAGGCCACTTTCAAGCAACTGACCGAGAATGCCGAGATCAATAATCTGTGCAA 4177900
Query 13780 GATCCTTGGTCTTCA--ACAAG--GAAA----AGACTACCAAGATGTTTCTGAA----CT 13827
|||| |||| || || | ||| |||| || || | |||| |||||| ||
Sbjct 4177899 GATCATTGGACTGCAGTATAAGAAGAAATATTTGAGTATC--GATG-ATCTGAAGACGCT 4177843
Query 13828 TCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGG 13887
||||||||| | ||||| ||||| ||| || | |||||||| ||||| |||||
Sbjct 4177842 TCGCTATGGCAAGGTGATGATCATGACTGATCAGGACCAGGATGGTTCCCACATTAAGGG 4177783
Query 13888 TCTCATCCTAAATATGATCCACTACTTCTGGCC 13920
||| || | ||| | || ||| | ||||||
Sbjct 4177782 TCTGCTCATCAATTTTATACACACCAACTGGCC 4177750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596439547827200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |