Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 127 4e-24
seq17440 120 5e-22
>seq17434
Length=8399593
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || |||| |||||||| | |||||| ||| || || || ||
Sbjct 1558168 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGA 1558109
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || ||||| || || ||||| ||||| | ||| ||||| |||||
Sbjct 1558108 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGG 1558049
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
||||||||||| || || || |||| ||| | |||| || ||||| || | || ||
Sbjct 1558048 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 1557989
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || || ||||| || || ||||| || || ||||||||
Sbjct 1557988 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
>seq17440
Length=24565398
Score = 120 bits (132), Expect = 5e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || ||||| | || || |||| || | || | ||| || ||| |||||||||
Sbjct 435534 ATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCG 435593
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | | ||| || | || ||||| ||||| || |||| ||||||||| |||
Sbjct 435594 GACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGA 435653
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || || ||||| | || | |||| |||||| ||| | |||
Sbjct 435654 GGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCC 435713
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||||| ||| || || || || || | || |||||||| || ||||||
Sbjct 435714 ACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764
Score = 118 bits (130), Expect = 2e-21
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || ||||| | || || |||| || | || | ||| || ||| |||||||||
Sbjct 435990 ATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCG 436049
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | | ||| || | || ||||| ||||| || |||| ||||||||| |||
Sbjct 436050 GACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGA 436109
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || || ||||| | || | |||| |||||| ||| | |||
Sbjct 436110 GGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCC 436169
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||||| ||| || || || || || | || |||||||| || ||||| ||
Sbjct 436170 ACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222
Score = 111 bits (122), Expect = 3e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| ||||||||||| || || | | ||| || || ||||||||||| || || | |
Sbjct 435353 AATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACG 435412
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||| || || || ||||| || || ||||| || |||| || | || ||||||
Sbjct 435413 CTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGT 435472
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||||| ||||| || ||||| || || || || || | ||||| || || || ||
Sbjct 435473 ATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTG 435532
Query 193358 CATT 193361
||||
Sbjct 435533 CATT 435536
Score = 111 bits (122), Expect = 3e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| ||||||||||| || || | | ||| || || ||||||||||| || || | |
Sbjct 435809 AATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACG 435868
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||| || || || ||||| || || ||||| || |||| || | || ||||||
Sbjct 435869 CTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGT 435928
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||||| ||||| || ||||| || || || || || | ||||| || || || ||
Sbjct 435929 ATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTG 435988
Query 193358 CATT 193361
||||
Sbjct 435989 CATT 435992
Score = 105 bits (116), Expect = 1e-17
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||| || | || | |||||| ||||||||||||||| || || | | |
Sbjct 435093 CGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCA 435152
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || ||||||||||| || || | | ||| || || || || ||||| || ||
Sbjct 435153 TCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 435212
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | || ||| || ||||||| ||||| || ||||| ||
Sbjct 435213 TCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATG 435272
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || | ||||| || || || ||||||
Sbjct 435273 GTCTTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||| |||||||| || || | | ||| || || ||||||||||| || || | | |
Sbjct 434670 ATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGC 434729
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| ||||| ||||| ||||| || || || || ||||| | || | |||| ||||||
Sbjct 434730 TGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTG 434789
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||| || || ||||| | ||| || || || || || | ||||| || || || |||
Sbjct 434790 TCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGC 434849
Query 193359 ATT 193361
|||
Sbjct 434850 ATT 434852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899458275340800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |