Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq17434 127 4e-24 seq17440 120 5e-22 >seq17434 Length=8399593 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || |||| |||||||| | |||||| ||| || || || || Sbjct 1558168 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGA 1558109 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || ||||| || || ||||| ||||| | ||| ||||| ||||| Sbjct 1558108 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGG 1558049 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| || || || |||| ||| | |||| || ||||| || | || || Sbjct 1558048 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 1557989 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| || || ||||| || || |||||||| Sbjct 1557988 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || |||| || | || | ||| || ||| ||||||||| Sbjct 435534 ATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCG 435593 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || | || ||||| ||||| || |||| ||||||||| ||| Sbjct 435594 GACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGA 435653 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||| | || | |||| |||||| ||| | ||| Sbjct 435654 GGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCC 435713 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||| ||| || || || || || | || |||||||| || |||||| Sbjct 435714 ACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || |||| || | || | ||| || ||| ||||||||| Sbjct 435990 ATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCG 436049 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || | || ||||| ||||| || |||| ||||||||| ||| Sbjct 436050 GACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGA 436109 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||| | || | |||| |||||| ||| | ||| Sbjct 436110 GGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCC 436169 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||||| ||| || || || || || | || |||||||| || ||||| || Sbjct 436170 ACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||||||||| || || | | ||| || || ||||||||||| || || | | Sbjct 435353 AATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACG 435412 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || ||||| || || ||||| || |||| || | || |||||| Sbjct 435413 CTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGT 435472 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||||| ||||| || ||||| || || || || || | ||||| || || || || Sbjct 435473 ATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTG 435532 Query 193358 CATT 193361 |||| Sbjct 435533 CATT 435536 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||||||||| || || | | ||| || || ||||||||||| || || | | Sbjct 435809 AATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACG 435868 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || ||||| || || ||||| || |||| || | || |||||| Sbjct 435869 CTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGT 435928 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||||| ||||| || ||||| || || || || || | ||||| || || || || Sbjct 435929 ATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTG 435988 Query 193358 CATT 193361 |||| Sbjct 435989 CATT 435992 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | || | |||||| ||||||||||||||| || || | | | Sbjct 435093 CGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCA 435152 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||||||||| || || | | ||| || || || || ||||| || || Sbjct 435153 TCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 435212 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | || ||| || ||||||| ||||| || ||||| || Sbjct 435213 TCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATG 435272 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | ||||| || || || |||||| Sbjct 435273 GTCTTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| |||||||| || || | | ||| || || ||||||||||| || || | | | Sbjct 434670 ATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGC 434729 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| ||||| || || || || ||||| | || | |||| |||||| Sbjct 434730 TGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTG 434789 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| || || ||||| | ||| || || || || || | ||||| || || || ||| Sbjct 434790 TCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGC 434849 Query 193359 ATT 193361 ||| Sbjct 434850 ATT 434852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899458275340800