Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq17440 95.1 2e-14 seq17439 91.5 2e-13 >seq17440 Length=24565398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || ||||||||||| || || || || |||||||| || Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||| || || |||||| || || || || || || |||||||| || Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||||||| | ||| || |||||||| || ||| | || || || || ||||| Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || || || || Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435555 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || || |||||||| || Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || || |||||| || || || || || || |||||||| ||| Sbjct 436159 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 436100 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || |||||||| || ||| | || || || || ||||| Sbjct 436099 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 436040 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || || || || Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGT 436011 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||||||||||||||| || || || || ||||| ||| | Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||| || || |||||| || || || || || || |||||||| || Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | | || | ||||| || ||| | |||||| | || || || || || || Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| || ||| |||| || || || || Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGT 434643 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||||||||||||||| || || || | || || ||| ||| Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||||| || || || ||||| || || || || || ||||| || Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | ||||| || ||| | |||||| | || || || || ||||| Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || || || || Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435327 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||||||||||||||| || || || | || || ||| ||| Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||||| || || || ||||| || || || || || ||||| || Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | ||||| || ||| | |||||| | || || || || ||||| Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || || || || Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435783 >seq17439 Length=18325388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 18428 ATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGA 18487 |||||||||||||||| || | ||||| || || |||| | ||||| || |||||| Sbjct 9056860 ATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGTACATTCTCCATGGCAATCTGA 9056919 Query 18488 AAACTATAAAACGATCTAGCCTCGGGATATTGAA---TCTCGCTATAAAATCTTTCTACC 18544 |||| ||| || | | ||||| | | || | || ||| ||| | || ||| Sbjct 9056920 AAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCCTGGCT---AAAGCGCTCAACC 9056976 Query 18545 AAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAA 18604 | |||||| ||||| || || || | | ||||| || ||||| |||| | ||||||| Sbjct 9056977 AGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCCAACACATGTGAAATGAAA 9057036 Query 18605 TGTTTTTCATTATC-CTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTC 18663 || ||||| || || || | ||| || || || || |||||||| || || Sbjct 9057037 TGACGCTCATTGTCTGTTAAGCGT-ACCCAGTCCGTCATGTCCTTGGATAGATCCACCTC 9057095 Query 18664 TTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||| ||||| || |||| |||||||| Sbjct 9057096 CTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731712451904000