Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 95.1 2e-14
seq17439 91.5 2e-13
>seq17440
Length=24565398
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | || ||||||||||| || || || || |||||||| ||
Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| ||| || || |||||| || || || || || || |||||||| ||
Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| ||||||| | ||| || |||||||| || ||| | || || || || |||||
Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| || || || ||
Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435555
Score = 93.3 bits (102), Expect = 6e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || ||||||||||| || || || || |||||||| ||
Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||| || || |||||| || || || || || || |||||||| |||
Sbjct 436159 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 436100
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||| || |||||||| || ||| | || || || || |||||
Sbjct 436099 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 436040
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| || || || ||
Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGT 436011
Score = 86.0 bits (94), Expect = 9e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || ||||||||||||||||||| || || || || ||||| ||| |
Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| ||| || || |||||| || || || || || || |||||||| ||
Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| | | || | ||||| || ||| | |||||| | || || || || || ||
Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
||| || ||| |||| || || || ||
Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGT 434643
Score = 86.0 bits (94), Expect = 9e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || ||||||||||||||||||| || || || | || || ||| |||
Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| |||| ||||| || || || ||||| || || || || || ||||| ||
Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| | | || | ||||| || ||| | |||||| | || || || || |||||
Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| || || || ||
Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435327
Score = 86.0 bits (94), Expect = 9e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || ||||||||||||||||||| || || || | || || ||| |||
Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| |||| ||||| || || || ||||| || || || || || ||||| ||
Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| | | || | ||||| || ||| | |||||| | || || || || |||||
Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| || || || ||
Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435783
>seq17439
Length=18325388
Score = 91.5 bits (100), Expect = 2e-13
Identities = 184/269 (68%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 18428 ATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGA 18487
|||||||||||||||| || | ||||| || || |||| | ||||| || ||||||
Sbjct 9056860 ATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGTACATTCTCCATGGCAATCTGA 9056919
Query 18488 AAACTATAAAACGATCTAGCCTCGGGATATTGAA---TCTCGCTATAAAATCTTTCTACC 18544
|||| ||| || | | ||||| | | || | || ||| ||| | || |||
Sbjct 9056920 AAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCCTGGCT---AAAGCGCTCAACC 9056976
Query 18545 AAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAA 18604
| |||||| ||||| || || || | | ||||| || ||||| |||| | |||||||
Sbjct 9056977 AGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCCAACACATGTGAAATGAAA 9057036
Query 18605 TGTTTTTCATTATC-CTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTC 18663
|| ||||| || || || | ||| || || || || |||||||| || ||
Sbjct 9057037 TGACGCTCATTGTCTGTTAAGCGT-ACCCAGTCCGTCATGTCCTTGGATAGATCCACCTC 9057095
Query 18664 TTCCGATGTCCAAAAAGATGATTCGGCCT 18692
||| ||||| || |||| ||||||||
Sbjct 9057096 CTCCACAGTCCAGAATGATGCTTCGGCCT 9057124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731712451904000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |