Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 132 9e-26
seq17440 87.8 4e-12
>seq17434
Length=8399593
Score = 132 bits (146), Expect = 9e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || || || || || | |||||| || || ||||||||
Sbjct 1558168 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGA 1558109
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || |||| |||||||| || |||||||||||||| | ||| ||||| || ||
Sbjct 1558108 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGG 1558049
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||||||||| || || || || ||| ||||| || | ||| |||| ||| ||
Sbjct 1558048 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 1557989
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| ||||| ||||| || | ||||||| || || |||||
Sbjct 1557988 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
>seq17440
Length=24565398
Score = 87.8 bits (96), Expect = 4e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || || ||||| | || ||||| | || | ||| || |||||| || ||
Sbjct 434850 ATTCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCG 434909
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| || | || || || |||||||| || | ||| || || ||
Sbjct 434910 GACAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGG 434969
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || || || || || || | || || | |||
Sbjct 434970 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCA 435029
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||||||||| || ||||| | || || | ||| |||||||||
Sbjct 435030 ACCTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984260017944000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |