Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17430 125 2e-23 seq17434 111 5e-19 >seq17430 Length=4274704 Score = 125 bits (138), Expect = 2e-23 Identities = 186/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || | |||||||||||| ||||| ||| | ||| || ||||| || Sbjct 2945858 TTCCATAGCCTTTATGAGACGACGCTGAATGTAACCGGTTTCCGCTGTCTTCACAGCCGT 2945917 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||| || ||||| ||||||| ||||| |||||||| | | ||| ||| | || Sbjct 2945918 ATCGATGAGACCCTCACGACCGCCCATCGCATGGAAATAGAACTCGGATGGTGTCAAACC 2945977 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | ||| |||| |||||||| |||| |||||| || || |||| | || Sbjct 2945978 GGCCAGATATGAGTTCTCGACGAAACCTCGCGACTCGGGACCATAATCATCCTTGATGAA 2946037 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 |||||||| || | ||| | | ||||| || || || || || || || |||||||| Sbjct 2946038 ATGTGGCAGAGTGCGCTTCCTAAAACCGTACGGTATCCGTTTACCCTCCACATTCTGCTG 2946097 Query 302814 TCCCAGGCACGAAATCATCTGCGA 302837 |||| || | ||| | ||| || Sbjct 2946098 ACCCACACAAGCAATAACCTGAGA 2946121 >seq17434 Length=8399593 Score = 111 bits (122), Expect = 5e-19 Identities = 567/898 (63%), Gaps = 7/898 (1%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || ||||| ||| ||| || ||| | ||||||||||| | ||| | ||| || Sbjct 1623199 TACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTG 1623258 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | ||| || | |||||| | || ||||| || || || ||||||| |||||| Sbjct 1623259 CTCTTGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCT 1623318 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGA 155809 || | || | ||| || | || |||||| || | || | |||| || Sbjct 1623319 TCAATGATGGCAAACCAAAGTGTTTGAGCTTTAATTA-CTCGATTCGCTTTGCCCTCTTT 1623377 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||| | ||||| | |||| || || || ||| || || || || Sbjct 1623378 CTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACA 1623437 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATC 155929 ||||| ||||| | ||| |||||| | ||| | || || | |||||| | ||| Sbjct 1623438 CTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGATC 1623497 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCT 155988 | ||| | ||||| || || || | |||| |||||| | ||| ||| || | Sbjct 1623498 AGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTT-T 1623556 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 || | || | ||||| ||||| | ||| ||||||| ||| || ||||| Sbjct 1623557 TCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATG 1623616 Query 156049 TACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 ||| | ||| |||||||||||| ||||| || || |||||||| |||| | Sbjct 1623617 CACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCA 1623676 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| || | | ||||| ||||||||||| || || | ||| | || | | Sbjct 1623677 GCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCAC 1623736 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| | ||||| | || || || ||||| | ||| || || ||||||| | Sbjct 1623737 GAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTT 1623796 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 || | |||||||| || ||||| ||||| |||| | || || | ||||| Sbjct 1623797 CGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACG 1623856 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACT 156345 | ||| || || ||| ||||| || ||||| || | |||||| | || ||| Sbjct 1623857 ACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACC 1623916 Query 156346 TATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGA 156405 | | ||||| || || |||||| | |||| || | || || || | | Sbjct 1623917 TTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATATCATCGCCATGTATCCCAA 1623976 Query 156406 TAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAA 156465 | ||||| | |||| ||| ||||| ||||||||| | || || || ||| | Sbjct 1623977 TCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCA 1624036 Query 156466 GGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 || | || || || || ||||| || ||||||| | | ||| ||||| | ||| Sbjct 1624037 AATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTA 1624094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471488722357280