Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17439 114 2e-19 seq17438 93.3 5e-13 seq17435 87.8 2e-11 seq17440 86.0 8e-11 >seq17439 Length=18325388 Score = 114 bits (126), Expect = 2e-19 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| || ||| | | ||||| || ||| | | ||||| ||| | Sbjct 18269510 AGAAGCGCACCGATGATATCACATCCTGGGATGCCGATTTTCTCAAAGTCGATCAGGGTA 18269451 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || ||||| | || |||||||| | || || ||| | |||| || || Sbjct 18269450 CGCTGTTCGAACTGATCTTGGCGGCCAACTATTTGGATATTAAGGGTTTGCTGGAGCTAA 18269391 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||||||||| ||||||||||| ||| | || ||||| ||||| ||||||| Sbjct 18269390 CATGCAAAACTGTGGCCAATATGATCAAGGGAAAGACTCCGGAGGACATCCGTAAGACCT 18269331 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 18269330 TCAACATCAAG 18269320 >seq17438 Length=17193109 Score = 93.3 bits (102), Expect = 5e-13 Identities = 214/317 (68%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCC-GCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTC 1572438 || || || |||||||| ||| | |||||| |||||||| ||||| ||||||| ||| Sbjct 7488485 CCAGTTGAACCAAAGCCAGCCTC-GCCGCGTTCGGTGTCCTCCAGTTTGTCGACCTGCTC 7488543 Query 1572439 GGGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCG--CGCCTCGCCCTGG 1572496 | || || | | || ||| | ||||| || ||||| |||| ||| | Sbjct 7488544 CAGATCCGGATAGAAGATGCGCTCGCAAATGAACTGTGCTATGCGATCGCCACGCTTT-- 7488601 Query 1572497 ACAACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || | ||||||||| | |||||||| || || || |||| | |||||| || || Sbjct 7488602 ACCTCAAAGTCGGCGTCCGAATGGTTGAACAGGACAACACCCAGGTTGCCGCGGTAATCC 7488661 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATGCC---CCTGACGGCCAGGGACGAGCGCGGC 1572613 | || | || || ||||| || |||||| | | ||||||||| ||| || ||| Sbjct 7488662 TCGTCTACAACCCCGGCGCCTACATCGATGAAGTTCTTCACGGCCAGGCCCGAACGTGGC 7488721 Query 1572614 GCCACGCGCCCATAGTAGCCCGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCG 1572673 ||||| || |||||| ||||| |||| | ||| |||| | || || || Sbjct 7488722 GCCACTCGGCCATAGGAGCCCTCGGGCACCTGCACCTGCAGATCAGTCTTGACAATGGCC 7488781 Query 1572674 CGGCCGCGTGCCGGCAC 1572690 ||||||||||||||| Sbjct 7488782 TTGCCGCGTGCCGGCAC 7488798 >seq17435 Length=10151454 Score = 87.8 bits (96), Expect = 2e-11 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 509089 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGAC 509148 |||| | || | |||| ||| | || |||||||| |||||||| ||||| |||||||| Sbjct 6389816 CGAGTTCTTCTTCCACACGATGGCTGGTCGCGAGGGTCTCGTCGATACGGCTGTCAAGAC 6389875 Query 509149 GGCCGAGACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAA 509208 ||||||||||||||| | ||||| || |||||| ||||| ||| || | Sbjct 6389876 GGCCGAGACGGGCTATCTGCAGCGTCGTCTGGTCAAGTGCTTGGAGGATCTGGTTGTCCA 6389935 Query 509209 GCGCGGCGGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGA 509268 || ||| ||||||||| |||| | ||| || ||| | ||| |||||||| Sbjct 6389936 TTACGATGGCACCGTGCGCAATGCCATCAACGAAATGGTCGATACCATCTACGGCGGCGA 6389995 Query 509269 CGG 509271 ||| Sbjct 6389996 CGG 6389998 >seq17440 Length=24565398 Score = 86.0 bits (94), Expect = 8e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 1852483 CCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCG 1852542 ||| |||| ||| || || || | |||||||| |||||||| | ||| | ||| Sbjct 2514976 CCATGGCGCCTTCATATTATCCAGATAGGCGTGCAGATCGGCAAACAAGATAGTCACCTC 2514917 Query 1852543 ACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGG 1852602 ||| ||||||| ||||||||| || | || | ||||| ||||||||| | | || || Sbjct 2514916 ACAACCGGCCTTGAGAAAGTCTGCAATCTTCGACATGGGAACAAAGTAGGCCACATGTGG 2514857 Query 1852603 GTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 || || || | || ||||||||||| || |||| |||||| Sbjct 2514856 TTTTCCAGTTGTTGCTGTGCCCCAATAGATTTTCAGATCGCGCTC 2514812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105707991928480