Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq17435 147 2e-30
seq17436 86.0 5e-12
>seq17435
Length=10151454
Score = 147 bits (162), Expect = 2e-30
Identities = 155/202 (77%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503
||||| || |||||||| ||||| || |||||||| ||||| || | || ||||||||
Sbjct 6373836 TGCGTCTGGGCGCCCAGTTCGCAGCCAAAGTACTTGGTCGGATACGTTGCGGGACGTCCG 6373895
Query 34504 A--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTC 34561
| |||| | || | ||||| |||||| || | || ||||||||||| |||||||| |
Sbjct 6373896 ATGGCGCGT--GCCACTTCGGCCATGTTAACCAACACGGTCTTGATGCCATTGCCCTTGC 6373953
Query 34562 CTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGC 34621
| ||||| ||||| || ||| ||||| |||||||| ||||| ||||| |||| |||
Sbjct 6373954 CCTCGACTTTGGCTTGGAGGCGTGGCATCTTGTAGCGATAGAAGATGTCCGTCACACTGC 6374013
Query 34622 GGTTAACGTTCACAGTCCCCAT 34643
| || || || || ||| ||||
Sbjct 6374014 GATTCACATTAACGGTCGCCAT 6374035
>seq17436
Length=11997470
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| ||||| || ||||| ||||| ||| | || ||||||| |
Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || || ||||| ||||| || ||| | ||| |||||
Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692287
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || |||||||| |||| | || | | |||||||||
Sbjct 6692288 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692347
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || ||||| || || | ||| ||||| | | ||||| || ||
Sbjct 6692348 ATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGG 6692394
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||||||||| || ||||| ||||| ||| | || ||||||| |
Sbjct 6692624 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692683
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || || ||||| ||||| || ||| | ||| |||||
Sbjct 6692684 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692743
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | || || || |||||||| |||| | || | | |||||||||
Sbjct 6692744 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692803
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || ||||| || || | ||| ||||| | | ||||| || ||
Sbjct 6692804 ATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGG 6692850
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || ||||| ||||| || ||||| ||||| ||| | || |||||||
Sbjct 6691937 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCT 6691996
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|||||| | | | || || ||||| ||||| || ||| | ||| |||
Sbjct 6691997 TCCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6692056
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | ||| || || |||||||| |||| | || | | ||||||
Sbjct 6692057 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTAC 6692116
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || || || | ||| ||||| | | ||||| || ||
Sbjct 6692117 AACATCCAGAAGGAGTCCACTCTACACTTGGTGCTCCGCCTGCGTGGTGG 6692166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412753850517920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |