Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17435 147 2e-30 seq17436 86.0 5e-12 >seq17435 Length=10151454 Score = 147 bits (162), Expect = 2e-30 Identities = 155/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 ||||| || |||||||| ||||| || |||||||| ||||| || | || |||||||| Sbjct 6373836 TGCGTCTGGGCGCCCAGTTCGCAGCCAAAGTACTTGGTCGGATACGTTGCGGGACGTCCG 6373895 Query 34504 A--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTC 34561 | |||| | || | ||||| |||||| || | || ||||||||||| |||||||| | Sbjct 6373896 ATGGCGCGT--GCCACTTCGGCCATGTTAACCAACACGGTCTTGATGCCATTGCCCTTGC 6373953 Query 34562 CTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGC 34621 | ||||| ||||| || ||| ||||| |||||||| ||||| ||||| |||| ||| Sbjct 6373954 CCTCGACTTTGGCTTGGAGGCGTGGCATCTTGTAGCGATAGAAGATGTCCGTCACACTGC 6374013 Query 34622 GGTTAACGTTCACAGTCCCCAT 34643 | || || || || ||| |||| Sbjct 6374014 GATTCACATTAACGGTCGCCAT 6374035 >seq17436 Length=11997470 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || ||||| ||||| ||| | || ||||||| | Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||| || ||| | ||| ||||| Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692287 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || |||||||| |||| | || | | ||||||||| Sbjct 6692288 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692347 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| || || | ||| ||||| | | ||||| || || Sbjct 6692348 ATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGG 6692394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || ||||| ||||| ||| | || ||||||| | Sbjct 6692624 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692683 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||| || ||| | ||| ||||| Sbjct 6692684 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692743 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || |||||||| |||| | || | | ||||||||| Sbjct 6692744 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692803 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| || || | ||| ||||| | | ||||| || || Sbjct 6692804 ATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGG 6692850 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || ||||| ||||| || ||||| ||||| ||| | || ||||||| Sbjct 6691937 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCT 6691996 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || || ||||| ||||| || ||| | ||| ||| Sbjct 6691997 TCCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6692056 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || |||||||| |||| | || | | |||||| Sbjct 6692057 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTAC 6692116 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || | ||| ||||| | | ||||| || || Sbjct 6692117 AACATCCAGAAGGAGTCCACTCTACACTTGGTGCTCCGCCTGCGTGGTGG 6692166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412753850517920