Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17440 100 5e-15 seq17435 89.7 8e-12 >seq17440 Length=24565398 Score = 100 bits (110), Expect = 5e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2411826 CCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCG 2411885 ||| |||| ||| ||| || || | |||||||| |||||||| | ||| ||||| Sbjct 2514976 CCATGGCGCCTTCATATTATCCAGATAGGCGTGCAGATCGGCAAACAAGATAGTCACCTC 2514917 Query 2411886 ACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGG 2411945 ||| ||||||| ||||||||| || | || | ||||| ||||||||| ||| ||| || Sbjct 2514916 ACAACCGGCCTTGAGAAAGTCTGCAATCTTCGACATGGGAACAAAGTAGGCCACATGTGG 2514857 Query 2411946 CTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 || || || | || ||||||||||| || Sbjct 2514856 TTTTCCAGTTGTTGCTGTGCCCCAATAGAT 2514827 Score = 91.5 bits (100), Expect = 2e-12 Identities = 245/370 (66%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| ||||||||| || | || ||||||||| ||| | || | || Sbjct 3050904 GGGACCACCTGGCGTGGGCAAGACAACAACGATACAGTGCCTGGCACGCATTCTGCTCGG 3050963 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 || | | || ||||||||||| | ||||| || |||| || || | || || Sbjct 3050964 CGACAGCTATAAAGATGCCGTGCTCGAGTTGAATGCATCCAACGAACGTGGAATTGATGT 3051023 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCT-GCCGCCCGGCCGCC 2019210 ||| | | | || || ||| | ||| | ||| | ||| | ||| |||| Sbjct 3051024 CGTTAGGAATAAGATAAAAATGTTCGCACAGCAAAAGGT-GACATTGCCACGCGGACGCC 3051082 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 | ||| | | || || |||||||| ||| || | ||| || ||| ||||| | | | Sbjct 3051083 ATAAGATTGTTATACTGGATGAGGCGGACAGCATGACGGAGGGGGCACAGCAATCATTGC 3051142 Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330 || |||||||||| || | || |||||||| |||||||| ||||||||||| | Sbjct 3051143 GACGCACCATGGAAATCTATTCGAATACGACGCGTTTTGCGCTCGCCTGCAACAC--CAG 3051200 Query 2019331 CG--ATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCAC 2019388 || | | | || ||| || |||| |||||| ||||| |||| || | ||| | Sbjct 3051201 CGAAAAGATTATAGAACCCATCCAATCCCGTTGTGCCATGCTGCGATTCACAAAACTCTC 3051260 Query 2019389 CGACGCCCAG 2019398 ||| |||||| Sbjct 3051261 CGATGCCCAG 3051270 >seq17435 Length=10151454 Score = 89.7 bits (98), Expect = 8e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 431075 CGAGATGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGAC 431134 |||| | || | |||| ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 6389816 CGAGTTCTTCTTCCACACGATGGCTGGTCGCGAGGGTCTCGTCGATACGGCTGTCAAGAC 6389875 Query 431135 GGCCGAGACGGGCTACATCCAGCGTCG 431161 ||||||||||||||| | |||||||| Sbjct 6389876 GGCCGAGACGGGCTATCTGCAGCGTCG 6389902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914391227656160