Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq17440 138 9e-28 >seq17440 Length=24565398 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| || || || || || || ||||||||||| || | Sbjct 435536 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435595 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| ||| ||| || || || || || ||| | ||||||| || ||||| || || Sbjct 435596 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 435655 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| ||||| || |||||| | |||||| |||| | |||||| | || | Sbjct 435656 AATTCCCTCCTTGTCCTG-AATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || |||||||| || || || ||||| ||||||||| Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| || || || || || || ||||||||||| || | Sbjct 435992 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 436051 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| ||| ||| || || || || || ||| | ||||||| || ||||| || || Sbjct 436052 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 436111 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| ||||| || |||||| | |||||| |||| | |||||| | || | Sbjct 436112 AATTCCCTCCTTGTCCTG-AATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| | ||| || || |||||||| || || || ||||| |||||||| || Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | ||| || ||||||||||| ||||| || || || || || || || | Sbjct 434852 TCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 434911 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || || ||| | ||||| | ||||| || || || Sbjct 434912 CAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGG 434971 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || || || | || | ||||| ||| |||| || Sbjct 434972 GATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAAC 435031 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || || ||||| | ||| || ||||| ||||||||| Sbjct 435032 CTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | ||| || ||||| || || || || || || ||||||||||| || | Sbjct 435308 TCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435367 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| ||| || | ||||| || || | || | | || || || || || Sbjct 435368 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGG 435427 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| |||||||| ||| || | || || | || | ||| || ||| |||| | Sbjct 435428 GATTCCCTCCTTGTCTTG-AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435486 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || || || ||||| || |||||||| || ||||||||| Sbjct 435487 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | ||| || ||||| || || || || || || ||||||||||| || | Sbjct 435764 TCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435823 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| ||| || | ||||| || || | || | | || || || || || Sbjct 435824 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGG 435883 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| |||||||| ||| || | || || | || | ||| || ||| |||| | Sbjct 435884 GATTCCCTCCTTGTCTTG-AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435942 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || || || ||||| || |||||||| || ||||||||| Sbjct 435943 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385137321659040