Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 138 9e-28
>seq17440
Length=24565398
Score = 138 bits (152), Expect = 9e-28
Identities = 170/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| || | ||| || ||||| || || || || || || ||||||||||| || |
Sbjct 435536 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435595
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| ||| ||| || || || || || ||| | ||||||| || ||||| || ||
Sbjct 435596 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 435655
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| ||||| ||||| || |||||| | |||||| |||| | |||||| | || |
Sbjct 435656 AATTCCCTCCTTGTCCTG-AATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||| | ||| || || |||||||| || || || ||||| |||||||||
Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| || | ||| || ||||| || || || || || || ||||||||||| || |
Sbjct 435992 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 436051
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| ||| ||| || || || || || ||| | ||||||| || ||||| || ||
Sbjct 436052 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 436111
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| ||||| ||||| || |||||| | |||||| |||| | |||||| | || |
Sbjct 436112 AATTCCCTCCTTGTCCTG-AATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|||| | ||| || || |||||||| || || || ||||| |||||||| ||
Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||||||||| | ||| || ||||||||||| ||||| || || || || || || || |
Sbjct 434852 TCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 434911
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| || || || || || ||| | ||||| | ||||| || || ||
Sbjct 434912 CAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGG 434971
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| |||||||| | || || || | || | ||||| ||| |||| ||
Sbjct 434972 GATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAAC 435031
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| || || || ||||| | ||| || ||||| |||||||||
Sbjct 435032 CTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||||||||| | ||| || ||||| || || || || || || ||||||||||| || |
Sbjct 435308 TCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435367
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||||||| ||| || | ||||| || || | || | | || || || || ||
Sbjct 435368 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGG 435427
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|| ||||| |||||||| ||| || | || || | || | ||| || ||| |||| |
Sbjct 435428 GATTCCCTCCTTGTCTTG-AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435486
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || ||||| || || || ||||| || |||||||| || |||||||||
Sbjct 435487 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||||||||| | ||| || ||||| || || || || || || ||||||||||| || |
Sbjct 435764 TCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435823
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||||||| ||| || | ||||| || || | || | | || || || || ||
Sbjct 435824 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGG 435883
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|| ||||| |||||||| ||| || | || || | || | ||| || ||| |||| |
Sbjct 435884 GATTCCCTCCTTGTCTTG-AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435942
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || ||||| || || || ||||| || |||||||| || |||||||||
Sbjct 435943 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385137321659040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |