Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq17437 230 2e-54 seq17436 123 2e-22 >seq17437 Length=14172833 Score = 230 bits (254), Expect = 2e-54 Identities = 734/1130 (65%), Gaps = 9/1130 (1%) Strand=Plus/Minus Query 281754 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT 281813 ||||| | || || || | |||||||| || |||||||| ||||| ||||| | || | Sbjct 826328 CAAGA-TGGCAGCCTGGACGGCAGCACCGTAAGCAACAGCCTCATCGGGATTGATAGACT 826270 Query 281814 CATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 281873 || || | || |||||||| | || || || | ||||| |||||||| | Sbjct 826269 TGTTCAGCTCCTTGCCATTGAACAGATCCTGCAGCAGGCGCTGCACCTTGGGAATACGCG 826210 Query 281874 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 281933 || || || || || ||||| || || | || || ||||| || | ||| | Sbjct 826209 TGGAGCCACCGACCAACACAATATCGTGAATGGCCGACTTGTCCAGCTTGGCATCGCGCA 826150 Query 281934 AAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAAT 281992 | | || || ||||| || | ||| | |||| || | || || ||||| Sbjct 826149 GAGCCTTCTCCACGGGGTCCATGGT-GCTGCGGAACAGATCAGCGTTCAGCTCCTCGAAA 826091 Query 281993 TTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATC 282052 || | ||| | | | || |||| | || ||||||| || |||| ||||| Sbjct 826090 CGGGCACGAGTGATTGAGGTATAGAAATCGGTGCCCTCGAACAGCGAGTCAATCTCAATG 826031 Query 282053 GTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTT 282112 | | || || || ||||| |||| || || ||||| || || || || | || | Sbjct 826030 CTCGCCTGGGTGGAGGAAGAAAGTGTGCGCTTTGCACGCTCGCAAGCGGTGCGCAGACGG 825971 Query 282113 CGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA 282170 || | || ||| ||| ||| ||| | || | || | |||||| || | | Sbjct 825970 CGCAGAGCAC--GCTTGTTGGAGGTCAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCA 825913 Query 282171 CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 282230 || | || || |||||||| ||||| || ||||| ||||| | || | || | || Sbjct 825912 CAAAGTGAGTGACTAGACGATTGTCAAAGTCCTCACCACCCAAATGGGTGTCACCGGCCG 825853 Query 282231 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCAC 282290 ||| | | || | ||| | || || |||| |||| || | ||||||| || |||| Sbjct 825852 TAGATTTGACCTCGAAGATGCCGTCATCAATCGACAGAATGGAAACATCAAAAGTACCAC 825793 Query 282291 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 282350 | |||| ||| ||||| | ||||| ||| | || || || || ||||| | Sbjct 825792 CGCCCAAATCGAAAATCAACACATTACGCTCTCCCACCGCCTTCTTGTCGAGGCCATAGG 825733 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 ||| ||||| |||||||| || || ||||| | ||| ||||| || || ||||| | | Sbjct 825732 CAATGGCAGCGGCAGTTGGCTCGTTGATAATACGCAATACATTCAGGCCGGCAATGGTGC 825673 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | ||||| || || ||||| | ||||| ||||| || || || || ||||| || |||| Sbjct 825672 CAGCATCCTTGGTCGCTTGACGCTGTGAGTCGTTGAAGTAGGCTGGCACAGTGATCACGG 825613 Query 282471 CATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCA 282530 ||| || || || || | ||| || || || | |||||||| | || | || Sbjct 825612 CATTGGTCACCGTCTTGCCCAGATACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCA 825553 Query 282531 TTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAA 282589 | || || || | || || ||| | | ||| || | | || | || |||| Sbjct 825552 TGGAGGAGATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATC 825494 Query 282590 TATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACA 282649 | || || | |||| | | ||||| || ||||| | |||||||| || || || Sbjct 825493 TTGGGCTTGCCATCAACGCTGACAACTTCGAAGGGCCAGTGCTTCATATCGGACTGCACG 825434 Query 282650 CTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA 282709 || | || | | |||||| | || || ||||| || || || | ||||| Sbjct 825433 GCCGAATCCTCGAACTTGCGACCAATCAGACGCTTAGCATCGAAGATCGTTTGAGTTGGG 825374 Query 282710 TTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAA 282769 || | || | |||| |||||| ||||| || |||| | | || || || || || | | Sbjct 825373 TTCATGGCCACCTGATTTTTGGCGGCATCACCGATCAAACGCTCCGTATCCGTGAAGGCA 825314 Query 282770 ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTT 282829 ||||| ||||| || || |||||||| || || || ||||| |||||||| || |||| Sbjct 825313 ACATACGATGGTGTCGTACGATTACCCTGGTCGTTGGCAATGATTTCAACCTTGCCATGC 825254 Query 282830 TGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || | ||||| || || | ||||| || ||||||||||| | ||| Sbjct 825253 TGGAACACACCCACGCAGGAGTAGGTTGTGCCCAAATCAATACCGACAGC 825204 >seq17436 Length=11997470 Score = 123 bits (136), Expect = 2e-22 Identities = 231/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| |||||||| || ||||| | ||||| || || || || | || Sbjct 8195219 ACGCTGATCGAAATCTTCGCCACCCAAATGAGTATCACCATTGGTGGCAACGACCTCAAA 8195278 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | |||| || | | || || | ||||| ||| || || |||| ||| |||| Sbjct 8195279 CACACCATTATCGATGGTCAGCAGGGACACATCGAAGGTGCCGCCGCCCAAATCGAAAAC 8195338 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || |||||| | || | ||| || || || |||||||| |||| ||||| ||||| Sbjct 8195339 GAGCACATTCTTCTC---GCCTTCCTTCTTGTCCAGACCATAAGCAATGGCAGCGGCAGT 8195395 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||| || || | || || | ||||||||||| || ||||| || ||||| Sbjct 8195396 CGGTTCATTTATGATGCGCATCACCTGGAGACCAGCAATGACGCCAGCATCCTTGGTGGC 8195455 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 || | || | |||||| ||||| || ||||| || | ||| |||| || || | || Sbjct 8195456 CTGACGCTGGGCATCGTTGAAATAGGCGGGAACGGTGACAACAGCATGAGTGACCTTCTT 8195515 Query 282487 TCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTAC 282521 |||| ||| ||||| || |||| |||||||||| Sbjct 8195516 GCCAAGATA--CGCTTCGGCCGTTTCCTTCATTTTAC 8195550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739774169701440