Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq17434 147 2e-30 seq17440 105 7e-18 >seq17434 Length=8399593 Score = 147 bits (162), Expect = 2e-30 Identities = 557/858 (65%), Gaps = 26/858 (3%) Strand=Plus/Plus Query 150995 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 151054 |||| |||| | ||||| || || || || ||| | |||||| ||||||| ||| Sbjct 1622863 GCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTT 1622922 Query 151055 AATAGAACGGCAGCATCGCTCACGTACGGTATG-CGCAACATAACAAATGCATCGGCCAA 151113 || || |||| | |||||| | || || ||| |||| | || |||||||| || || Sbjct 1622923 AAAAGTGCGGCCTCTTCGCTCTCATAAGG-ATGACGCATTAGAATCAATGCATCCGCGAA 1622981 Query 151114 ACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 151173 ||||| | || || || ||||| |||||||| | ||| ||||| ||||| || Sbjct 1622982 TCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAG 1623041 Query 151174 AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGT 151233 || ||| | ||| ||||| |||||||||||| | || ||| |||| || Sbjct 1623042 CGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTC 1623101 Query 151234 GTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATCGA 151290 | || | | || || | || | | | | | | | || | |||||||| Sbjct 1623102 TTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGA 1623161 Query 151291 CGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAA 151350 |||| ||| || |||||| |||| ||||| || |||| | || ||||| | || | Sbjct 1623162 TGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAG 1623221 Query 151351 ATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTT 151410 ||| |||||||| || || ||| |||||||| ||||||||||| | |||||| Sbjct 1623222 ATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTT 1623281 Query 151411 GTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGT 151470 | | | |||||| |||||||| || || | || ||| || ||| ||| || Sbjct 1623282 GAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATG----GCA--AACCA 1623335 Query 151471 AACCG--CGGGCATTTGCT-CGCGAAAC---TGGCCTTTATCCTCATAATGTTTGTACCA 151524 || | | || || | | ||| | | ||| | | ||| || || ||| || Sbjct 1623336 AAGTGTTTGAGCTTTAATTACTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTA-CA 1623394 Query 151525 GTAT-TCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTA 151583 || | ||||| || || || | ||| | ||| ||||||| | || ||||| | Sbjct 1623395 GTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCA 1623454 Query 151584 ATGACCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCG 151642 ||||| || | | || |||| |||||||||||||| | ||| || | |||||| || Sbjct 1623455 GGGACCA-ATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCA 1623513 Query 151643 TTCATCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAAC 151701 | | || ||||| || | || || || |||| ||||| || | | || Sbjct 1623514 TAAAACAGCTCACGTGC-CCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAA 1623572 Query 151702 GTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT--- 151758 || | || || |||||||||| || | || | || || || |||||| Sbjct 1623573 TTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACC 1623632 Query 151759 GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCC 151818 |||||| |||||||| | || ||| |||||| || || ||||||||||| | ||| || Sbjct 1623633 GCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCC 1623692 Query 151819 GCTGGCGGTGCCGTTCGT 151836 | | ||||| ||||| Sbjct 1623693 ATTCGAAGTGCCATTCGT 1623710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || || | ||| || ||||| || ||||||||||| | |||| ||||| Sbjct 1558149 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCC 1558090 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| || |||||| |||| | ||| |||||||| ||||| || ||||||||||| Sbjct 1558089 AATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1558030 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | || || | ||||| || |||| ||| | ||||| Sbjct 1558029 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 1557970 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | ||||| ||||| |||||||| Sbjct 1557969 CCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| ||| || || | || || || || || || ||||| ||| Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||| | ||||| || || |||| ||||| |||||||| ||||| Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| |||||| || | | ||| | ||||| | ||||| || Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488437497408000