Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17440 190 4e-43 seq17434 149 1e-30 seq17439 84.2 4e-11 >seq17440 Length=24565398 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 435537 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435596 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || ||||| |||||||| | || |||||||||||||| Sbjct 435597 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 435656 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||| || || || ||||||||||| || || | || || ||| Sbjct 435657 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACT 435716 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || |||||||| ||||| ||||||||||| ||||||||| Sbjct 435717 TCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 435993 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 436052 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || ||||| |||||||| | || |||||||||||||| Sbjct 436053 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 436112 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||| || || || ||||||||||| || || | || || ||| Sbjct 436113 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACT 436172 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 436173 TCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 436219 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| ||||| ||||| || || ||||| ||||| || || || Sbjct 434625 CCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGAC 434684 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | |||||||| || ||||| || | || ||||||||||| Sbjct 434685 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 434744 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||| || || || ||||||||||| || || ||||||| ||| Sbjct 434745 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACT 434804 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || ||||| || || || || ||||||||| Sbjct 434805 TCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 434852 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| ||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 435309 CCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435368 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | |||||||| || ||||| || | ||||| ||||| || Sbjct 435369 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGG 435428 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| || || || || ||||| ||||| |||||| || Sbjct 435429 ATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACC 435488 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || ||||| || ||||| || || || || ||||||||| Sbjct 435489 TCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| ||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 435765 CCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435824 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | |||||||| || ||||| || | ||||| ||||| || Sbjct 435825 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGG 435884 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| || || || || ||||| ||||| |||||| || Sbjct 435885 ATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACC 435944 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || ||||| || ||||| || || || || ||||||||| Sbjct 435945 TCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 >seq17434 Length=8399593 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || || |||||||| || || |||||||| ||| | | ||| Sbjct 1558155 CGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCA 1558096 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || ||||||||||||| | || ||||||||||| |||||||| || Sbjct 1558095 TCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 1558036 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| |||||||| || ||||| ||||| || || | ||| || Sbjct 1558035 TCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 1557976 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || || ||||| Sbjct 1557975 GTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17439 Length=18325388 Score = 84.2 bits (92), Expect = 4e-11 Identities = 192/289 (66%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 198338 TCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAG 198397 ||| |||||| | | || | ||| || | | || || ||||||||| | ||| | | Sbjct 5993654 TCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 5993713 Query 198398 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTA 198457 |||||| ||||| ||||||||||| || ||||| || ||||| |||||| || Sbjct 5993714 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 5993773 Query 198458 TAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 198517 | | || || ||| | ||||| || || || ||||| || || || || || Sbjct 5993774 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTATGTGGG 5993833 Query 198518 TTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGG 198577 || |||||||| ||| | || | || |||| | |||| || | | || ||||| Sbjct 5993834 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGCTGGAGGGAGCGTGCCATCTTTGG 5993893 Query 198578 GAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTT 198626 || ||| | | ||||| ||| | || | ||| || ||||||||| Sbjct 5993894 CAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTT 5993942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981607810712160