Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 102 1e-16
seq4835 91.5 3e-13
>seq17439
Length=18325388
Score = 102 bits (112), Expect = 1e-16
Identities = 198/290 (68%), Gaps = 2/290 (1%)
Strand=Plus/Plus
Query 183021 TCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACG 183080
||| |||||| | | || | ||| || ||| || || ||||||||| | ||| | ||
Sbjct 5993654 TCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 5993713
Query 183081 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTA 183140
|||||| ||||| ||||||||||| || ||||| || ||||| |||||| ||
Sbjct 5993714 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 5993773
Query 183141 TAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200
| | || ||||| | ||||| || || ||| ||||| || || || || ||
Sbjct 5993774 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTATGTGGG 5993833
Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCTATATTTG 183259
|| |||||||| ||| | || | |||||| || || |||| || | | || ||||
Sbjct 5993834 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 5993892
Query 183260 GAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 183309
| || ||| | | ||||| ||| | | | ||| ||| |||||||||
Sbjct 5993893 GCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTT 5993942
>seq4835
Length=1216
Score = 91.5 bits (100), Expect = 3e-13
Identities = 177/259 (68%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 183021 TCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACG 183080
||| |||||| | | || | ||| || ||| || || ||||||||| | ||| | ||
Sbjct 260 TCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 201
Query 183081 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTA 183140
|||||| ||||| ||||||||||| || ||||| || ||||| |||||| ||
Sbjct 200 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 141
Query 183141 TAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200
| | || ||||| | ||||| || || ||| ||||| || || || || ||
Sbjct 140 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTATGTGGG 81
Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCTATATTTG 183259
|| |||||||| ||| | || | |||||| || || |||| || | | || ||||
Sbjct 80 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 22
Query 183260 GAAAGATAAGATATATGAA 183278
| || ||| | | |||||
Sbjct 21 GCAAAATACGCTTCATGAA 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903214256358400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |