Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq17439 102 1e-16 seq4835 91.5 3e-13 >seq17439 Length=18325388 Score = 102 bits (112), Expect = 1e-16 Identities = 198/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 183021 TCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACG 183080 ||| |||||| | | || | ||| || ||| || || ||||||||| | ||| | || Sbjct 5993654 TCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 5993713 Query 183081 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTA 183140 |||||| ||||| ||||||||||| || ||||| || ||||| |||||| || Sbjct 5993714 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 5993773 Query 183141 TAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200 | | || ||||| | ||||| || || ||| ||||| || || || || || Sbjct 5993774 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTATGTGGG 5993833 Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCTATATTTG 183259 || |||||||| ||| | || | |||||| || || |||| || | | || |||| Sbjct 5993834 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 5993892 Query 183260 GAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 183309 | || ||| | | ||||| ||| | | | ||| ||| ||||||||| Sbjct 5993893 GCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTT 5993942 >seq4835 Length=1216 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 183021 TCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACG 183080 ||| |||||| | | || | ||| || ||| || || ||||||||| | ||| | || Sbjct 260 TCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 201 Query 183081 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTA 183140 |||||| ||||| ||||||||||| || ||||| || ||||| |||||| || Sbjct 200 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 141 Query 183141 TAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200 | | || ||||| | ||||| || || ||| ||||| || || || || || Sbjct 140 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTATGTGGG 81 Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCTATATTTG 183259 || |||||||| ||| | || | |||||| || || |||| || | | || |||| Sbjct 80 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 22 Query 183260 GAAAGATAAGATATATGAA 183278 | || ||| | | ||||| Sbjct 21 GCAAAATACGCTTCATGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903214256358400