Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17438 172 6e-38 >seq17438 Length=17193109 Score = 172 bits (190), Expect = 6e-38 Identities = 292/415 (70%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 || ||||| || || || |||||||||| || |||| ||||| |||||||| || ||| Sbjct 3984291 GGTTCCACATGATTCAGATAGACGTGCGTATCGCCCATCGTGTGTACAAAGTCGCCAGGC 3984350 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || || || ||||| || || | ||| ||||||||||| | |||| || ||||||||| Sbjct 3984351 TTCAGACCCGTCACATGTGCAATCATATAGGTGAGCAGGGCGTAGGATGCGATGTTGAAG 3984410 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC---- 147098 || || || || |||||||| | | ||| |||| |||||| |||||||| || Sbjct 3984411 GGAACACCTAGACCCATGTCGGCACTGCGCTGATACATCTGGCAGGAGAGCTCGCCCCTT 3984470 Query 147099 GTCGGCCACGTAAA-ACTGGCA-CAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGG 147156 | | || || ||| | | ||| |||| ||||||||| ||||||||||| || | Sbjct 3984471 GACTGCGACACAAAGAATTGCACCAGGCAGTGGCACGGTGGCAGCGCCATCTTAGGTATA 3984530 Query 147157 TCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCT 147216 ||| || ||||| || || | | | || | | |||| || | || Sbjct 3984531 TCCAACGGATTCCATGCGGACATTATGATGCGACGATCCGCGGGATTGTTGCGTATGGTG 3984590 Query 147217 TCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCAC 147275 || || ||| | || |||||| ||||||||||| ||| | ||| ||||| || | Sbjct 3984591 TCAATCACCTGCTGCAACTGGTCGACGCCCTGGCCTGTATAG-TCGTCATCGCAG-CCGC 3984648 Query 147276 G-TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 | ||| |||||||||||| | ||||||||| |||||||| || ||||| || || Sbjct 3984649 GATACTCGGCCCCAAAGTGACGCCACTGGAAACCGTACACGGGACCCAGATCTCC 3984703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583360799616000