Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17440 89.7 7e-12 >seq17440 Length=24565398 Score = 89.7 bits (98), Expect = 7e-12 Identities = 229/347 (66%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 || ||||| |||||||||||| || | || || || | | || ||||||||| Sbjct 3051248 AATCGCAGCATGGCACAACGGGATTGGATGGGTTCTATAATCTTTTCGCTGGTGTTGCAG 3051189 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 || || ||||| ||||||||||| | || |||||||||| || | | || || Sbjct 3051188 GCGAGCGCAAAACGCGTCGTATTCGAATAGATTTCCATGGTGCGTCGCAATGATTGCTGT 3051129 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 ||| || ||| | || ||| ||||| || || || | ||||| ||||| ||| | ||| Sbjct 3051128 GCCCCCTCCGTCATGCTGTCCGCCTCATCCAGTATAACAATCTTATGGCGTCCGCGTGGC 3051069 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 | ||| ||| | ||| ||| || | || | ||||| || | || || Sbjct 3051068 AATGTCACCTTTTGCTGTGCGAACATTTTTATCTTATTCCTAACGACATCAATTCCACGT 3051009 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGT--CGGCGGCCGCACCCAAGAGGACGC 333170 |||| || || || | ||||||||||| || | || | || || | || | || Sbjct 3051008 TCGTTGGATGCATTCAACTCGAGCACGGCATCTTTATAGCTGTCG--CCGAGCAGAATGC 3050951 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | ||||||||| || | || ||||||||| ||| || || ||| Sbjct 3050950 GTGCCAGGCACTGTATCGTTGTTGTCTTGCCCACGCCAGGTGGTCCC 3050904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176129079945280