Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq17439 125 6e-24 seq17436 125 6e-24 seq17438 114 1e-20 seq17440 111 1e-19 seq4835 109 5e-19 seq17434 95.1 1e-14 >seq17439 Length=18325388 Score = 125 bits (138), Expect = 6e-24 Identities = 190/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || |||||||| || |||| ||||||||| ||| |||||| | |||||| || Sbjct 5993688 GAGGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACG 5993747 Query 44223 GAAGATGCGCAAACCG-CGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 | || || | | | | | | || ||| |||||||||||||| || |||| Sbjct 5993748 GC-GACGCCGGAGCTGGCTTTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGA 5993806 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 |||||||| ||||| || || || || || |||||||||||| | ||| | ||||| || Sbjct 5993807 TGGTCGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCA 5993866 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 |||| ||| | |||| |||||| |||||| | |||| ||||||||| | || ||| Sbjct 5993867 GGGC-TGGAGGGAGCGTGCCATCTTTGGCAAAATACGCTTCATGAACTATCAAGGCTGCA 5993925 Query 44401 TCAGAAAGTTTGATGTAAAAACCTA 44425 | ||||||||||| || |||| Sbjct 5993926 AGCGGAAGTTTGATGTTAACGCCTA 5993950 >seq17436 Length=11997470 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| |||| || |||||| || ||||||||||| | Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | ||| Sbjct 6692106 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692047 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| | |||||| Sbjct 6692046 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6691987 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 6691986 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || ||||||||||| | Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | ||| Sbjct 6693018 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692959 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| | |||||| Sbjct 6692958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692899 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 6692898 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||| || || ||||||||||| | Sbjct 6692394 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692335 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | ||| Sbjct 6692334 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692275 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| | |||||| Sbjct 6692274 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692215 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 6692214 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||| || || ||||||||||| | Sbjct 6692850 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692791 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 6692790 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692731 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| | |||||| Sbjct 6692730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692671 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||||||||| || || |||||||| Sbjct 6692670 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || ||||||||||| | Sbjct 6693306 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693247 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 6693246 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693187 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || || | |||||| Sbjct 6693186 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693127 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||||||||| || || |||||||| Sbjct 6693126 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || || |||||||| | Sbjct 6692622 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 6692563 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 6692562 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692503 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| | |||||| Sbjct 6692502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692443 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 6692442 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || ||||||||||| | Sbjct 6693534 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693475 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 6693474 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693415 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || || | |||||| Sbjct 6693414 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693355 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 6693354 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || || || Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | |||| || |||||||||| |||||| ||||| | | Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | |||||||||| ||||| || || || |||||||| || || Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 6693547 GAAGATCTGCAT 6693536 >seq17438 Length=17193109 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||| |||| || ||| || | || || Sbjct 16961298 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 16961357 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||| |||||||| || | |||| | |||||||||| Sbjct 16961358 CAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 16961417 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | | | | ||||| | |||||||||| ||||| || || Sbjct 16961418 AATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTT 16961477 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || | || |||||||| || |||||| Sbjct 16961478 CCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 >seq17440 Length=24565398 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||| || || ||||| |||| ||| || || | || || Sbjct 434871 ACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACCATCCTCA 434930 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| | Sbjct 434931 AGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 434990 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | |||||| | ||| ||||||| || || || || Sbjct 434991 ATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAATGGTCTTT 435050 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | || |||||||| |||||||||| Sbjct 435051 CCAGTGAGGGTCTTCACAAAGATCTGCATTC 435081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||| || || |||| |||||| || | || |||| ||| || || || || Sbjct 435116 CTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAA 435175 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | ||||||||| |||||| ||| | | Sbjct 435176 GATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTT 435235 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | ||| ||||||| ||||| || || || ||||| ||||| || Sbjct 435236 CTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAAC 435295 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 435296 GAAGATCTGCATTC 435309 >seq4835 Length=1216 Score = 109 bits (120), Expect = 5e-19 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || |||||||| || |||| ||||||||| ||| |||||| | |||||| || Sbjct 226 GAGGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACG 167 Query 44223 GAAGATGCGCAAACCG-CGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 | || || | | | | | | || ||| |||||||||||||| || |||| Sbjct 166 GC-GACGCCGGAGCTGGCTTTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGA 108 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 ||||| || ||||| || || || || || |||||||||||| | ||| | ||||| || Sbjct 107 TGGTCGTGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCA 48 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACT 44388 |||| ||| | |||| |||||| |||||| | |||| |||||||| Sbjct 47 GGGC-TGGAGGGAGCGTGCCATCTTTGGCAAAATACGCTTCATGAACT 1 >seq17434 Length=8399593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || || ||| || |||||||||||||| | Sbjct 1558167 CCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAA 1558108 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||||| || ||||| || || |||||||| || | |||| Sbjct 1558107 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGA 1558048 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| |||||| || | | || | | || || || ||| ||| Sbjct 1558047 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 1557988 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | ||||| || || || ||||| Sbjct 1557987 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450695326995200