Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 125 6e-24
seq17436 125 6e-24
seq17438 114 1e-20
seq17440 111 1e-19
seq4835 109 5e-19
seq17434 95.1 1e-14
>seq17439
Length=18325388
Score = 125 bits (138), Expect = 6e-24
Identities = 190/265 (72%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222
|| || |||||||| || |||| ||||||||| ||| |||||| | |||||| ||
Sbjct 5993688 GAGGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACG 5993747
Query 44223 GAAGATGCGCAAACCG-CGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281
| || || | | | | | | || ||| |||||||||||||| || ||||
Sbjct 5993748 GC-GACGCCGGAGCTGGCTTTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGA 5993806
Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340
|||||||| ||||| || || || || || |||||||||||| | ||| | ||||| ||
Sbjct 5993807 TGGTCGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCA 5993866
Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400
|||| ||| | |||| |||||| |||||| | |||| ||||||||| | || |||
Sbjct 5993867 GGGC-TGGAGGGAGCGTGCCATCTTTGGCAAAATACGCTTCATGAACTATCAAGGCTGCA 5993925
Query 44401 TCAGAAAGTTTGATGTAAAAACCTA 44425
| ||||||||||| || ||||
Sbjct 5993926 AGCGGAAGTTTGATGTTAACGCCTA 5993950
>seq17436
Length=11997470
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| |||| || |||||| || ||||||||||| |
Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| |||||||| || | |||
Sbjct 6692106 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692047
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || ||| | ||||||
Sbjct 6692046 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6691987
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || || || ||||||||
Sbjct 6691986 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || ||||||||||| |
Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| |||||||| || | |||
Sbjct 6693018 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692959
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || ||| | ||||||
Sbjct 6692958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692899
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || || || ||||||||
Sbjct 6692898 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || ||| || || ||||||||||| |
Sbjct 6692394 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692335
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || ||||| |||| |||||||| || | |||
Sbjct 6692334 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692275
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || ||| | ||||||
Sbjct 6692274 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692215
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || || || ||||||||
Sbjct 6692214 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || ||| || || ||||||||||| |
Sbjct 6692850 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692791
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || |||| |||||||| || | |||
Sbjct 6692790 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692731
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || ||| | ||||||
Sbjct 6692730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692671
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || ||||||||||| || || ||||||||
Sbjct 6692670 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || ||||||||||| |
Sbjct 6693306 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693247
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || |||| |||||||| || | |||
Sbjct 6693246 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693187
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || || | ||||||
Sbjct 6693186 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693127
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || ||||||||||| || || ||||||||
Sbjct 6693126 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || || |||||||| |
Sbjct 6692622 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 6692563
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || |||| |||||||| || | |||
Sbjct 6692562 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692503
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || ||| | ||||||
Sbjct 6692502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692443
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || || || ||||||||
Sbjct 6692442 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || ||||||||||| |
Sbjct 6693534 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693475
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || |||| |||||||| || | |||
Sbjct 6693474 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693415
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | || || | ||||||
Sbjct 6693414 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693355
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || || || ||||||||
Sbjct 6693354 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| | | || || | || ||||||||||| || || ||
Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||| || | |||| || |||||||||| |||||| ||||| | |
Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || | |||||||||| ||||| || || || |||||||| || ||
Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 6693547 GAAGATCTGCAT 6693536
>seq17438
Length=17193109
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | ||| |||||| || |||||||| |||| || ||| || | || ||
Sbjct 16961298 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 16961357
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| || ||||| ||||| |||||||| || | |||| | ||||||||||
Sbjct 16961358 CAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 16961417
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| ||| | | | | | ||||| | |||||||||| ||||| || ||
Sbjct 16961418 AATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTT 16961477
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|| || | || |||||||| || ||||||
Sbjct 16961478 CCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508
>seq17440
Length=24565398
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||||||| | || |||||| || || ||||| |||| ||| || || | || ||
Sbjct 434871 ACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACCATCCTCA 434930
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| |
Sbjct 434931 AGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 434990
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707
||||| ||| | | | | |||||| | ||| ||||||| || || || ||
Sbjct 434991 ATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAATGGTCTTT 435050
Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| || | || |||||||| ||||||||||
Sbjct 435051 CCAGTGAGGGTCTTCACAAAGATCTGCATTC 435081
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || ||||| || || |||| |||||| || | || |||| ||| || || || ||
Sbjct 435116 CTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAA 435175
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | | ||||||||| |||||| ||| | |
Sbjct 435176 GATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTT 435235
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| | ||| ||||||| ||||| || || || ||||| ||||| ||
Sbjct 435236 CTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAAC 435295
Query 35725 AAATATCTGCATTC 35738
|| ||||||||||
Sbjct 435296 GAAGATCTGCATTC 435309
>seq4835
Length=1216
Score = 109 bits (120), Expect = 5e-19
Identities = 164/228 (72%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222
|| || |||||||| || |||| ||||||||| ||| |||||| | |||||| ||
Sbjct 226 GAGGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACG 167
Query 44223 GAAGATGCGCAAACCG-CGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281
| || || | | | | | | || ||| |||||||||||||| || ||||
Sbjct 166 GC-GACGCCGGAGCTGGCTTTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGA 108
Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340
||||| || ||||| || || || || || |||||||||||| | ||| | ||||| ||
Sbjct 107 TGGTCGTGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCA 48
Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACT 44388
|||| ||| | |||| |||||| |||||| | |||| ||||||||
Sbjct 47 GGGC-TGGAGGGAGCGTGCCATCTTTGGCAAAATACGCTTCATGAACT 1
>seq17434
Length=8399593
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || || || ||| || |||||||||||||| |
Sbjct 1558167 CCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAA 1558108
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| ||||| || ||||| || || |||||||| || | ||||
Sbjct 1558107 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGA 1558048
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | || |||||| |||||| || | | || | | || || || ||| |||
Sbjct 1558047 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 1557988
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || |||||||| | ||||| || || || |||||
Sbjct 1557987 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450695326995200
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