Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17434 446 2e-120 seq17439 233 3e-56 >seq17434 Length=8399593 Score = 446 bits (494), Expect = 2e-120 Identities = 1212/1847 (66%), Gaps = 20/1847 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || || || ||||| ||||| || || || ||||| |||| ||| ||| Sbjct 1622272 GCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGACCGGCTTTCCACGAGTAAAAA 1622331 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| |||||| ||| | || || || | ||| || || | ||| |||||| Sbjct 1622332 TGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACATGTATGTTGAACGACTGACTT 1622391 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA-GGA-ATTT 68572 ||||| ||||| || || | ||| || |||||||| || | | |||| | ||| |||| Sbjct 1622392 TGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATCGT--TGTTTTCACGGATATTT 1622449 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGG 68629 |||| | |||||| | | | | | || | ||| | | ||| | ||||| || | Sbjct 1622450 CCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTATGGATTCGATGTTTTGTATTG 1622509 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 |||| | | || || ||| |||||| || ||||||| |||||| | |||||||| Sbjct 1622510 ATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATCCCACAAGTCCAGCTCCGTTA 1622569 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | | | ||| |||| || | || || || || || | ||| | || |||| Sbjct 1622570 AATCACGCAACAAATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGT 1622629 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 | || || |||||| || || | ||||||||||| |||| |||||||| || |||| Sbjct 1622630 AGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATG 1622689 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869 | |||||||| || || || | | | ||| | | |||||| |||| | Sbjct 1622690 CGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGACAGCT 1622749 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAA 68929 | || ||||| ||||| ||||| | |||| ||| | |||||| |||| | Sbjct 1622750 TAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTAAGA 1622809 Query 68930 TTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT 68989 | || || || | ||| ||| |||||||| |||||||||| || || | || Sbjct 1622810 TACCCTTGCTAACTGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATT 1622869 Query 68990 CACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049 | || || || || | ||| || |||| || ||||| || || | | ||| | | | Sbjct 1622870 CGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTG 1622929 Query 69050 GTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAA 69109 || ||| || || | |||| | | | ||||| |||||||| || ||||| || | Sbjct 1622930 CGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCA 1622989 Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAAT 69169 | |||||||| || |||| ||| | ||| || | | || || |||| ||||| | Sbjct 1622990 CACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGT 1623049 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 | || || || || |||||||| | ||| | |||| ||| || || || |||| Sbjct 1623050 AGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTT 1623109 Query 69230 TGAGAAAATCAAA----TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGA 69285 | || || | | ||| | | |||||||| |||| ||| | ||||||| | Sbjct 1623110 TCTTGAAGTCGTACGTTTTGTCGGAC-GTCACAAACATGTTCAATGCAATCGATGCTAAA 1623168 Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 || || || || | |||| | | ||| | | || || || ||||||||||| Sbjct 1623169 TTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTG 1623228 Query 69346 CATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGA 69405 |||||||| || |||| |||||||||||| ||||| ||| || | ||||||| | || Sbjct 1623229 CATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACAGC 1623288 Query 69406 ATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCA 69465 || | || || ||||| || | ||| | ||| || || | ||||| ||| Sbjct 1623289 ATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAGCT 1623348 Query 69466 TTTATTACGGTCTTGTAACGCTT----CTCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521 || |||| || | ||||| |||||| || ||||| || || || || Sbjct 1623349 TTAATTA----CTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCAAA 1623404 Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581 || || ||||||||||| | | || ||||| | || ||| ||||||| ||||| | Sbjct 1623405 ATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATC 1623464 Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 |||| | | || ||||||||||| ||||| || ||||| | || ||| || || Sbjct 1623465 CTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTC 1623524 Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701 | | | || || || || || || ||||| || | ||| | ||| || | ||||| Sbjct 1623525 ACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATC 1623584 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 |||||||| || || | ||| || || | | |||||||| ||| || |||||||| Sbjct 1623585 CGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATC 1623644 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 | || | || ||||| | || | |||||| || | | ||||| || | || Sbjct 1623645 CACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCC 1623704 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 ||| || ||| |||| | | ||| | || |||||| | || || || || || Sbjct 1623705 ATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCC 1623764 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || || ||| ||||| | || || ||| | | | | || ||||| || Sbjct 1623765 ACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGA 1623824 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 ||| | |||| | | ||| ||||| |||||||| || | | || | || Sbjct 1623825 ATCGGAGACCATGGTTAAAAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCGGC 1623884 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 ||| | ||| || ||||| || ||||| | ||||||| |||||||| || || || | Sbjct 1623885 AAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCAC 1623944 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| | || ||||| ||| || || |||| ||| ||||||| ||| ||||| || Sbjct 1623945 AGCAGCATCAATATCATCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCTGTGG 1624004 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 || ||| | |||| | |||||| |||| || || ||| || || || ||||| || Sbjct 1624005 ACGCTCTGCTATTTTGTGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAAATCC 1624064 Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 |||||| || || |||||| | ||||| || || ||||||||| Sbjct 1624065 AAAATAATTATAGCCAAAGTCACGATCGTAGATGATCGCAGAATTTA 1624111 >seq17439 Length=18325388 Score = 233 bits (258), Expect = 3e-56 Identities = 554/828 (67%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 || ||||| || || ||||| |||||||| ||||| || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAAT 39448 |||||| ||| ||||| ||| |||||| |||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 | ||| || || || || || ||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT-GTCTACGGCCTCTGTTATTATCG- 39566 || || | ||| || || |||||||| | || || ||| || || || | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTC-ACAGCATCCGAGACGATCTC 9056540 Query 39567 -ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT--TAAGCAGGCGA 39623 ||| | | ||| || || | |||| | || | ||||| ||| | || | Sbjct 9056541 AATGATGCGT--TCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACC--GCAA 9056596 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 |||| ||||| || |||||||| | || | ||||| || || || || || |||| Sbjct 9056597 AGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCA 9056656 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 |||| ||||||||||| ||||| || |||| |||||| || |||||||||||||| Sbjct 9056657 TTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTT 9056716 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATGTA-TCCACT 39800 | || || || || |||| || | ||| || | | | | | || ||| | |||| Sbjct 9056717 CGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAG 9056776 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | ||||| || || || ||||||| ||||||||||| |||||||| ||||||| Sbjct 9056777 AGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGAT 9056836 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 ||| | || | |||| | ||| || || |||| || ||| ||||| ||||| | Sbjct 9056837 AATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGT 9056896 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 | | || || || || |||||||| || || || || | || || ||||| || || | Sbjct 9056897 GTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTT 9056956 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | | ||| | || ||| ||| || || || || ||||| ||||| || || | Sbjct 9056957 CCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAG 9057016 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 |||| |||||| ||| |||| |||| | ||| || |||||| | || | Sbjct 9057017 CCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTACCCAGTCCGTCATGT 9057076 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | || |||| ||| || || || | ||||| || || || || |||| Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686759053881600