Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 167 2e-36
seq17429 113 4e-20
seq17438 104 2e-17
>seq17439
Length=18325388
Score = 167 bits (184), Expect = 2e-36
Identities = 519/793 (65%), Gaps = 23/793 (3%)
Strand=Plus/Minus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
|| ||||| || || || || ||| || || || || || ||| ||||| || |||
Sbjct 9057023 GTGTTGGCTTTCTTCGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTT 9056964
Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968
|| ||||| || ||||| ||| || || || || ||||| ||||| |||||||| ||
Sbjct 9056963 AGCCAGGAAGTGCAGATTAC-AGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGA 9056905
Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028
||| | || || || ||||||||| | || || || || || ||| |||| || |
Sbjct 9056904 GAATGTACACTCAGAGATGTACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATCA 9056845
Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088
| || | || ||||| || |||||| | || || | || | ||| || |||||
Sbjct 9056844 GCGCGATTATCTCTTCAATGCTATTGAAACAATGCCGGCTGTAAAGCGTAAGGCGGACTG 9056785
Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGC 44145
||| || ||||| || || | | | ||||| || || || | || || ||
Sbjct 9056784 GGCGCTCTCTTGGATTTCATCCAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGC 9056725
Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205
| || |||||||| |||||| || ||||| |||| || ||| | || || ||
Sbjct 9056724 TGCCGTCGAAGGCATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCG 9056665
Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265
|| | ||||| || |||| || ||||| ||| | || |||||||| || | ||
Sbjct 9056664 TGGCCTAATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCA 9056605
Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATA-AGCCTTCATG---TA 44321
|||||| ||||| |||| || || || | | | ||| | | | |
Sbjct 9056604 TTGCGACTTTGCG-----GTTA--TGATGTTCCAGCACCTGGTGCAGCGTCCCAGCCGTG 9056552
Query 44322 AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAG 44381
| || | || || || || || || | || || || || ||| | || |
Sbjct 9056551 AACGCATCATTGAGATCGTCTCGGATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACG 9056492
Query 44382 CATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACA 44441
| || ||||||||| | || || |||||| ||||| | |||||||||| | |
Sbjct 9056491 CTTTGCCTGTAAATCTGATTGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCG 9056432
Query 44442 TTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAA--ACCC 44499
| || ||||| || | |||| || ||| || |||| ||||| ||||| | ||
Sbjct 9056431 TGGCCGATCGCTTGTTGGTGGAGCTCGGTGTCGGTAAAA--TATATAACACAAAGAATCC 9056374
Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559
||| ||| ||||||| ||||| ||||| || ||||| || |||||||| || ||
Sbjct 9056373 ATTTACTTTCATGGAAATGATTTCATTGGACGGTAAAACCAATTTTTTTGAGAAGAAAGT 9056314
Query 44560 TGGAGAATATCAGCGAATGGGCGT--CATGATAACAAGT-GACAATAAATTTACTACGGA 44616
|| ||||||||||| |||||||| ||| | | | | ||||| |||||| ||
Sbjct 9056313 GGGCGAATATCAGCGCATGGGCGTGACATCAAATCGGTTGGACAACGTATTTACACTCGA 9056254
Query 44617 TGAAGATTTCTAA 44629
|| ||||||||||
Sbjct 9056253 TGCAGATTTCTAA 9056241
>seq17429
Length=4233967
Score = 113 bits (124), Expect = 4e-20
Identities = 198/287 (69%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| || ||||| || ||||| |||| || | |||||||| ||| |||| || | |||
Sbjct 2700729 CCGAAGATTGTCAACGGTCCGCAAATATTGGACAAATATGTGGGTGAATCCGAGGCGAAT 2700670
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| || || |||| || || || || || || | || || |||| | || ||| |
Sbjct 2700669 ATTCGTCGCCTGTTCGCCGATGCCGAGGAGGAGGAGAAGCGACTAGGCCCGAATAGTGGT 2700610
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---T 19605
||||||| || || | ||||| | || || || || ||| | || |||| |
Sbjct 2700609 CTGCACATCATCATCTTCGATGAGATCGATGCGATATGCAAGGCGCGTGGCTCTGTGGCT 2700550
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || || || |||||||| |||||||| || ||| | ||| | ||||| ||
Sbjct 2700549 GGCAATAGTGGCGTCCACGACACTGTCGTCAATCAGCTGCTGGCGAAAATTGACGGCGTG 2700490
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709
| || ||||||||||| | || ||||||||||| ||| ||| |||
Sbjct 2700489 GAGCAGCTGAATAATATACTGGTCATTGGCATGACCAATCGACGGGA 2700443
>seq17438
Length=17193109
Score = 104 bits (114), Expect = 2e-17
Identities = 200/294 (68%), Gaps = 6/294 (2%)
Strand=Plus/Minus
Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192
|||||||| ||||| || || || ||||| || || || |||||||| |||||||||
Sbjct 3984430 GACATGGGTCTAGGTGTTCCCTTCAACATCGCATCCTACGCCCTGCTCACCTATATGATT 3984371
Query 41193 GCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATT 41252
||||| || || | | || ||||| || ||||| |||||| | || ||| || |
Sbjct 3984370 GCACATGTGACGGGTCTGAAGCCTGGCGACTTTGTACACACGATGGGCGATACGCACGTC 3984311
Query 41253 TACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCA 41312
|| | ||||| | || ||||| || || ||| ||| || | ||||||||
Sbjct 3984310 TATCTGAATCATGTGGAACCGTTGCAGGAGCAGATGAAACGTGTGCCACGTCCATTTCCC 3984251
Query 41313 ACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTT---T 41369
| ||| | || || || |||||||| ||||| ||||| || |||||| ||
Sbjct 3984250 AAGCTCCGCATCAAGCGGCAGGTTGAAAAAATTGAGGATTTCTGTTACGATGACTTCGAA 3984191
Query 41370 GTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTATGA 41423
|||||| || ||||| ||||| || || || ||| | ||| | || |||
Sbjct 3984190 GTCGTT---GACTACAACCCGTATGAAAAGATTCAAATGAAGATGGCCGTTTGA 3984140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397371520727200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |