Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq17439 167 2e-36 seq17429 113 4e-20 seq17438 104 2e-17 >seq17439 Length=18325388 Score = 167 bits (184), Expect = 2e-36 Identities = 519/793 (65%), Gaps = 23/793 (3%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || || || || ||| || || || || || ||| ||||| || ||| Sbjct 9057023 GTGTTGGCTTTCTTCGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTT 9056964 Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 || ||||| || ||||| ||| || || || || ||||| ||||| |||||||| || Sbjct 9056963 AGCCAGGAAGTGCAGATTAC-AGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGA 9056905 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| | || || || ||||||||| | || || || || || ||| |||| || | Sbjct 9056904 GAATGTACACTCAGAGATGTACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATCA 9056845 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 | || | || ||||| || |||||| | || || | || | ||| || ||||| Sbjct 9056844 GCGCGATTATCTCTTCAATGCTATTGAAACAATGCCGGCTGTAAAGCGTAAGGCGGACTG 9056785 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGC 44145 ||| || ||||| || || | | | ||||| || || || | || || || Sbjct 9056784 GGCGCTCTCTTGGATTTCATCCAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGC 9056725 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | || |||||||| |||||| || ||||| |||| || ||| | || || || Sbjct 9056724 TGCCGTCGAAGGCATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCG 9056665 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 || | ||||| || |||| || ||||| ||| | || |||||||| || | || Sbjct 9056664 TGGCCTAATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCA 9056605 Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATA-AGCCTTCATG---TA 44321 |||||| ||||| |||| || || || | | | ||| | | | | Sbjct 9056604 TTGCGACTTTGCG-----GTTA--TGATGTTCCAGCACCTGGTGCAGCGTCCCAGCCGTG 9056552 Query 44322 AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAG 44381 | || | || || || || || || | || || || || ||| | || | Sbjct 9056551 AACGCATCATTGAGATCGTCTCGGATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACG 9056492 Query 44382 CATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACA 44441 | || ||||||||| | || || |||||| ||||| | |||||||||| | | Sbjct 9056491 CTTTGCCTGTAAATCTGATTGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCG 9056432 Query 44442 TTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAA--ACCC 44499 | || ||||| || | |||| || ||| || |||| ||||| ||||| | || Sbjct 9056431 TGGCCGATCGCTTGTTGGTGGAGCTCGGTGTCGGTAAAA--TATATAACACAAAGAATCC 9056374 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 ||| ||| ||||||| ||||| ||||| || ||||| || |||||||| || || Sbjct 9056373 ATTTACTTTCATGGAAATGATTTCATTGGACGGTAAAACCAATTTTTTTGAGAAGAAAGT 9056314 Query 44560 TGGAGAATATCAGCGAATGGGCGT--CATGATAACAAGT-GACAATAAATTTACTACGGA 44616 || ||||||||||| |||||||| ||| | | | | ||||| |||||| || Sbjct 9056313 GGGCGAATATCAGCGCATGGGCGTGACATCAAATCGGTTGGACAACGTATTTACACTCGA 9056254 Query 44617 TGAAGATTTCTAA 44629 || |||||||||| Sbjct 9056253 TGCAGATTTCTAA 9056241 >seq17429 Length=4233967 Score = 113 bits (124), Expect = 4e-20 Identities = 198/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||| || ||||| |||| || | |||||||| ||| |||| || | ||| Sbjct 2700729 CCGAAGATTGTCAACGGTCCGCAAATATTGGACAAATATGTGGGTGAATCCGAGGCGAAT 2700670 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || |||| || || || || || || | || || |||| | || ||| | Sbjct 2700669 ATTCGTCGCCTGTTCGCCGATGCCGAGGAGGAGGAGAAGCGACTAGGCCCGAATAGTGGT 2700610 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---T 19605 ||||||| || || | ||||| | || || || || ||| | || |||| | Sbjct 2700609 CTGCACATCATCATCTTCGATGAGATCGATGCGATATGCAAGGCGCGTGGCTCTGTGGCT 2700550 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || || |||||||| |||||||| || ||| | ||| | ||||| || Sbjct 2700549 GGCAATAGTGGCGTCCACGACACTGTCGTCAATCAGCTGCTGGCGAAAATTGACGGCGTG 2700490 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | || ||||||||||| | || ||||||||||| ||| ||| ||| Sbjct 2700489 GAGCAGCTGAATAATATACTGGTCATTGGCATGACCAATCGACGGGA 2700443 >seq17438 Length=17193109 Score = 104 bits (114), Expect = 2e-17 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192 |||||||| ||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 3984430 GACATGGGTCTAGGTGTTCCCTTCAACATCGCATCCTACGCCCTGCTCACCTATATGATT 3984371 Query 41193 GCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATT 41252 ||||| || || | | || ||||| || ||||| |||||| | || ||| || | Sbjct 3984370 GCACATGTGACGGGTCTGAAGCCTGGCGACTTTGTACACACGATGGGCGATACGCACGTC 3984311 Query 41253 TACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCA 41312 || | ||||| | || ||||| || || ||| ||| || | |||||||| Sbjct 3984310 TATCTGAATCATGTGGAACCGTTGCAGGAGCAGATGAAACGTGTGCCACGTCCATTTCCC 3984251 Query 41313 ACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTT---T 41369 | ||| | || || || |||||||| ||||| ||||| || |||||| || Sbjct 3984250 AAGCTCCGCATCAAGCGGCAGGTTGAAAAAATTGAGGATTTCTGTTACGATGACTTCGAA 3984191 Query 41370 GTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTATGA 41423 |||||| || ||||| ||||| || || || ||| | ||| | || ||| Sbjct 3984190 GTCGTT---GACTACAACCCGTATGAAAAGATTCAAATGAAGATGGCCGTTTGA 3984140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397371520727200