Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17434 325 3e-84 seq17440 113 4e-20 seq17438 93.3 4e-14 >seq17434 Length=8399593 Score = 325 bits (360), Expect = 3e-84 Identities = 1034/1576 (66%), Gaps = 53/1576 (3%) Strand=Plus/Plus Query 130410 CGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTT 130469 |||||||||| || |||||||| | |||||||| ||||| | ||||||||| || || | Sbjct 1622246 CGACGGTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCT 1622305 Query 130470 TGAGTCCAATTTTGTGTCCA----TAATTGTGGAT-GCTGCACATTGTTTGG--TAATTG 130522 | || || ||| ||| ||| ||||| | || || ||||| || ||| Sbjct 1622306 TAAGACCGGCTTT----CCACGAGTAAAAATGGATCGATGT-CA--GTTTGCCATAGTTG 1622358 Query 130523 GGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || | ||||| |||||||| ||| || ||||||||| || || || | || || Sbjct 1622359 GGCTCAGCCACATGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCT 1622418 Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 ||||| | || | | ||||| || ||||| ||||||| || |||||||| | Sbjct 1622419 GCCATTTTGATCGTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACA 1622478 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702 | ||| |||||| | || ||| | || |||| || |||| || | Sbjct 1622479 TTTTTTGGTATGGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTC 1622538 Query 130703 ATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATT 130762 ||| | ||| |||| | |||| | ||| | |||||||| ||| | | Sbjct 1622539 ATATCATCATCCCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACC 1622598 Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || ||||| | ||| ||||||| ||| ||||| || |||| ||||| ||| Sbjct 1622599 TGGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGAT 1622658 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || || ||||| | |||||| || |||| |||||| |||||| || || | |||||| Sbjct 1622659 TCATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAA 1622718 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || || | ||| ||| | |||| |||| | | ||| ||||| ||| ||| Sbjct 1622719 TTGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTT 1622778 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT----GGA 130998 ||| | ||| ||||||||| | |||| || || || || | ||||| ||| Sbjct 1622779 GGTGTC---TTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGA 1622835 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 | | | ||| ||| |||||| | |||| ||| ||| ||||||| || || Sbjct 1622836 T----AGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCC 1622891 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118 |||| |||||||| ||||||| |||||| || || | | |||||| ||||| Sbjct 1622892 AAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGG 1622951 Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178 | ||||| ||| || || || |||| || || | |||| || | |||| ||| Sbjct 1622952 ATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATG 1623011 Query 131179 TTTTAAATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTG 131236 ||||| |||| | | | ||| | |||| ||| |||||||||||||| Sbjct 1623012 GCGAAAATTGGATTTCTTTG--CCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTA 1623069 Query 131237 TTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCA 131296 || ||||| ||| ||| ||||| ||||| ||| | ||| || |||| Sbjct 1623070 TTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGT---T 1623126 Query 131297 GTTTCGAGGTTTACAAA-TTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTC 131355 | ||| | ||||| || | | || || || || | ||| || || || |||| Sbjct 1623127 TTGTCGGACGTCACAAACATGTTCAATGCA-ATCGATGCTAAATTGCACACGGCAATTTC 1623185 Query 131356 GTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 || | |||||| |||||||| | ||| | |||||||| || |||||||||| Sbjct 1623186 ATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCAC 1623245 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCG 131474 |||||| |||||||| || || | |||| ||||||| ||| |||||| || ||||| | Sbjct 1623246 ATTTTGCTGATTGCTCTT-GCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAG 1623304 Query 131475 TTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGAT--AT 131530 | || || || | |||||| ||| | | |||| |||| |||| |||| | || Sbjct 1623305 TCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTT--GAGC-TTTAATTACTCGAT 1623361 Query 131531 TTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGG--CCAAACG 131588 | | ||| || | ||| ||||| | |||||| | ||||| | | | |||||| Sbjct 1623362 TCGCTTTGCCCTC-TTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAAC- 1623419 Query 131589 AACTGTCCAAATTGGGACA-TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 | || | | |||||| || |||| ||||| || ||||| | | || ||| Sbjct 1623420 ATCT-TGGAGGCCGGGACACTTATGTGGG-CACATCAGGGACCAATCCTCATTGGCTTCG 1623477 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || || |||||||||| ||| || | |||||| || || ||||| || | || | | Sbjct 1623478 ACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGC 1623537 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || ||| | ||| | |||| ||||||| | ||| || || || |||| |||||| || Sbjct 1623538 TCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGC 1623597 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACC 131824 |||||||| | || | ||| || ||||||||| || |||| |||| || || Sbjct 1623598 TCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCC 1623657 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 | || ||| |||| |||| ||| ||| ||| || || | | ||||| |||| | Sbjct 1623658 ACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAA 1623717 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 || || |||| ||||| | || |||||||| || || || || || || ||| Sbjct 1623718 ATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTG 1623777 Query 131945 GAGATTAGTGCGCATT 131960 ||||| | ||||||| Sbjct 1623778 GAGATCATGGCGCATT 1623793 >seq17440 Length=24565398 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||| |||||||| |||||| | Sbjct 435081 CCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGAC 435140 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| | |||||| |||||| | ||||||||||| || || || || Sbjct 435141 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 435200 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | |||||| Sbjct 435201 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435260 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || |||| ||||| || ||||| ||||| Sbjct 435261 TCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| |||| ||||| || | || || || || || |||||||||||| Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| | ||||| | |||||| |||||| | ||||||||||| ||||| || || Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || || || || | |||| | |||||| | | ||| || Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | || || |||| ||||| || ||||| ||||| Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| || |||||| || | |||| | ||||| Sbjct 435327 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 435386 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||| |||||| | |||||||||||||| || || || | ||||| || || Sbjct 435387 AACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGA 435446 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||| || | | |||||| || ||||| || | || Sbjct 435447 ATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTT 435506 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||| || ||||| ||||| Sbjct 435507 CCAGTCAATGTTTTAACGAAGATCTGCAT 435535 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| || |||||| || | |||| | ||||| Sbjct 435783 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 435842 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||| |||||| | |||||||||||||| || || || | ||||| || || Sbjct 435843 AACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGA 435902 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||| || | | |||||| || ||||| || | || Sbjct 435903 ATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTT 435962 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||| || ||||| ||||| Sbjct 435963 CCAGTCAATGTTTTAACGAAGATCTGCAT 435991 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || |||||||||||| || |||| | || || Sbjct 434871 ACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACCATCCTCA 434930 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || | |||||| || || || || | ||||| || || | Sbjct 434931 AGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 434990 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | |||||| || ||||| || | || Sbjct 434991 ATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAATGGTCTTT 435050 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 435051 CCAGTGAGGGTCTTCACAAAGATCTGCAT 435079 >seq17438 Length=17193109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | ||||| || | ||| || || || || || ||||||||| Sbjct 16961279 TGCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 16961338 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || ||||| | || | |||||| ||||| || | Sbjct 16961339 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 16961398 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| || | | || | ||||| | || || | Sbjct 16961399 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCA 16961458 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | || || || || || ||||||||||||||||| Sbjct 16961459 CCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCAT 16961507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424844080193280