Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 325 3e-84
seq17440 113 4e-20
seq17438 93.3 4e-14
>seq17434
Length=8399593
Score = 325 bits (360), Expect = 3e-84
Identities = 1034/1576 (66%), Gaps = 53/1576 (3%)
Strand=Plus/Plus
Query 130410 CGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTT 130469
|||||||||| || |||||||| | |||||||| ||||| | ||||||||| || || |
Sbjct 1622246 CGACGGTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCT 1622305
Query 130470 TGAGTCCAATTTTGTGTCCA----TAATTGTGGAT-GCTGCACATTGTTTGG--TAATTG 130522
| || || ||| ||| ||| ||||| | || || ||||| || |||
Sbjct 1622306 TAAGACCGGCTTT----CCACGAGTAAAAATGGATCGATGT-CA--GTTTGCCATAGTTG 1622358
Query 130523 GGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582
|| | ||||| |||||||| ||| || ||||||||| || || || | || ||
Sbjct 1622359 GGCTCAGCCACATGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCT 1622418
Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642
||||| | || | | ||||| || ||||| ||||||| || |||||||| |
Sbjct 1622419 GCCATTTTGATCGTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACA 1622478
Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702
| ||| |||||| | || ||| | || |||| || |||| || |
Sbjct 1622479 TTTTTTGGTATGGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTC 1622538
Query 130703 ATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATT 130762
||| | ||| |||| | |||| | ||| | |||||||| ||| | |
Sbjct 1622539 ATATCATCATCCCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACC 1622598
Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822
|| || ||||| | ||| ||||||| ||| ||||| || |||| ||||| |||
Sbjct 1622599 TGGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGAT 1622658
Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882
|| || ||||| | |||||| || |||| |||||| |||||| || || | ||||||
Sbjct 1622659 TCATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAA 1622718
Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942
|| || | ||| ||| | |||| |||| | | ||| ||||| ||| |||
Sbjct 1622719 TTGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTT 1622778
Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT----GGA 130998
||| | ||| ||||||||| | |||| || || || || | ||||| |||
Sbjct 1622779 GGTGTC---TTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGA 1622835
Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058
| | | ||| ||| |||||| | |||| ||| ||| ||||||| || ||
Sbjct 1622836 T----AGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCC 1622891
Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118
|||| |||||||| ||||||| |||||| || || | | |||||| |||||
Sbjct 1622892 AAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGG 1622951
Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178
| ||||| ||| || || || |||| || || | |||| || | |||| |||
Sbjct 1622952 ATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATG 1623011
Query 131179 TTTTAAATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTG 131236
||||| |||| | | | ||| | |||| ||| ||||||||||||||
Sbjct 1623012 GCGAAAATTGGATTTCTTTG--CCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTA 1623069
Query 131237 TTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCA 131296
|| ||||| ||| ||| ||||| ||||| ||| | ||| || ||||
Sbjct 1623070 TTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGT---T 1623126
Query 131297 GTTTCGAGGTTTACAAA-TTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTC 131355
| ||| | ||||| || | | || || || || | ||| || || || ||||
Sbjct 1623127 TTGTCGGACGTCACAAACATGTTCAATGCA-ATCGATGCTAAATTGCACACGGCAATTTC 1623185
Query 131356 GTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415
|| | |||||| |||||||| | ||| | |||||||| || ||||||||||
Sbjct 1623186 ATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCAC 1623245
Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCG 131474
|||||| |||||||| || || | |||| ||||||| ||| |||||| || ||||| |
Sbjct 1623246 ATTTTGCTGATTGCTCTT-GCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAG 1623304
Query 131475 TTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGAT--AT 131530
| || || || | |||||| ||| | | |||| |||| |||| |||| | ||
Sbjct 1623305 TCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTT--GAGC-TTTAATTACTCGAT 1623361
Query 131531 TTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGG--CCAAACG 131588
| | ||| || | ||| ||||| | |||||| | ||||| | | | ||||||
Sbjct 1623362 TCGCTTTGCCCTC-TTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAAC- 1623419
Query 131589 AACTGTCCAAATTGGGACA-TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647
| || | | |||||| || |||| ||||| || ||||| | | || |||
Sbjct 1623420 ATCT-TGGAGGCCGGGACACTTATGTGGG-CACATCAGGGACCAATCCTCATTGGCTTCG 1623477
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707
|| || |||||||||| ||| || | |||||| || || ||||| || | || | |
Sbjct 1623478 ACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGC 1623537
Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767
|| ||| | ||| | |||| ||||||| | ||| || || || |||| |||||| ||
Sbjct 1623538 TCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGC 1623597
Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACC 131824
|||||||| | || | ||| || ||||||||| || |||| |||| || ||
Sbjct 1623598 TCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCC 1623657
Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884
| || ||| |||| |||| ||| ||| ||| || || | | ||||| |||| |
Sbjct 1623658 ACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAA 1623717
Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944
|| || |||| ||||| | || |||||||| || || || || || || |||
Sbjct 1623718 ATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTG 1623777
Query 131945 GAGATTAGTGCGCATT 131960
||||| | |||||||
Sbjct 1623778 GAGATCATGGCGCATT 1623793
>seq17440
Length=24565398
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | || | ||||| || | || || ||||| |||||||| |||||| |
Sbjct 435081 CCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGAC 435140
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | ||||| | |||||| |||||| | ||||||||||| || || || ||
Sbjct 435141 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 435200
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| || | | | || | ||||| | | ||||||
Sbjct 435201 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435260
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | || || |||| ||||| || ||||| |||||
Sbjct 435261 TCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| || |||| |||| ||||| || | || || || || || ||||||||||||
Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| | |||| | ||||| | |||||| |||||| | ||||||||||| ||||| || ||
Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || || || || | |||| | |||||| | | ||| ||
Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| | ||| || | || || |||| ||||| || ||||| |||||
Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || ||||| || |||||| || | |||| | |||||
Sbjct 435327 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 435386
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| |||||| |||||| | |||||||||||||| || || || | ||||| || ||
Sbjct 435387 AACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGA 435446
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||| || | | |||||| || ||||| || | ||
Sbjct 435447 ATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTT 435506
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| |||| ||||| || ||||| |||||
Sbjct 435507 CCAGTCAATGTTTTAACGAAGATCTGCAT 435535
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || ||||| || |||||| || | |||| | |||||
Sbjct 435783 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 435842
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| |||||| |||||| | |||||||||||||| || || || | ||||| || ||
Sbjct 435843 AACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGA 435902
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||| || | | |||||| || ||||| || | ||
Sbjct 435903 ATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTT 435962
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| |||| ||||| || ||||| |||||
Sbjct 435963 CCAGTCAATGTTTTAACGAAGATCTGCAT 435991
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || || || || |||||||||||| || |||| | || ||
Sbjct 434871 ACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACCATCCTCA 434930
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | || | |||||| || || || || | ||||| || || |
Sbjct 434931 AGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 434990
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| | | |||||| || ||||| || | ||
Sbjct 434991 ATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAATGGTCTTT 435050
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||||||||| |||||
Sbjct 435051 CCAGTGAGGGTCTTCACAAAGATCTGCAT 435079
>seq17438
Length=17193109
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||||| || | ||||| || | ||| || || || || || |||||||||
Sbjct 16961279 TGCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 16961338
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| | ||||| ||||| || ||||| | || | |||||| ||||| || |
Sbjct 16961339 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 16961398
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || |||||| || | | || | ||||| | || || |
Sbjct 16961399 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCA 16961458
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || | || || | || || || || || |||||||||||||||||
Sbjct 16961459 CCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCAT 16961507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424844080193280
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