Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq14947 127 8e-25 seq8535 114 5e-21 seq6666 113 2e-20 seq7916 104 9e-18 seq8340 100 1e-16 seq3970 80.6 1e-10 >seq14947 Length=5661 Score = 127 bits (140), Expect = 8e-25 Identities = 81/87 (93%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 22789 GCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGATCT-TAT 22847 || |||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||| Sbjct 208 GCCTCCTTAGCTCATGAAAATCTCGATAACTCAAAAACTACGCCCGGTGGTGATCTCTAT 267 Query 22848 TTCATTATGGTGAAAGTTGGAACCTCT 22874 ||||||||||||||||| ||||||||| Sbjct 268 TTCATTATGGTGAAAGTCGGAACCTCT 294 >seq8535 Length=1667 Score = 114 bits (126), Expect = 5e-21 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGA 22841 ||| |||||||| |||||| |||||||||||||||||| | ||||||||| ||||||| Sbjct 1647 CATATTAGCTTCACTAGCTCATGAAAATCTCGATAACTCTATAAATACGCCTCGTAGTGA 1588 Query 22842 TCTTATTTCATTATGGTGAAAGTTGGAACCTCT 22874 |||| ||||| ||||||||||| || ||||||| Sbjct 1587 TCTTCTTTCAGTATGGTGAAAGCTGTAACCTCT 1555 >seq6666 Length=1393 Score = 113 bits (124), Expect = 2e-20 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGA 22841 |||||||||||| |||| || | ||||| |||||||| ||||||||||||| |||||||| Sbjct 175 CATTTTAGCTTCTTTAGGTCTTCAAAATATCGATAACACAAAAAATACGCCAGGTAGTGA 234 Query 22842 TCTTATTTCATTATGGTGAAAGTTGGAACCTC 22873 | ||| ||||||||| ||||| ||||||||| Sbjct 235 TATTACTTCATTATGTTGAAAAGTGGAACCTC 266 >seq7916 Length=1560 Score = 104 bits (114), Expect = 9e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 22787 TAGCTTCCTTAGCTCCTGAAAA-TCTCGATAACTCAAAAAATACGCCCGGTAGTGATCTT 22845 ||||| |||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 104 TAGCTACCTTAGATCCAGAAAAGTCTCGATATCTCAAAAAATACGCGCGGTAGTGATCTT 163 Query 22846 ATTTCATTATGGTGAAAGTTGGAACCTCT 22874 || || ||||||||||| |||||||| Sbjct 164 ATGTCTCCATGGTGAAAGTGAGAACCTCT 192 >seq8340 Length=1626 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGA 22841 |||||||||||| ||||| || ||||||||||||||| ||| |||| |||||||||| Sbjct 1624 CATTTTAGCTTCGCAAGCTCAGGAGAATCTCGATAACTCAGAAATTACGTCCGGTAGTGA 1565 Query 22842 TCTTATTTCATTATGGTGAAAGTTGGAACCTCT 22874 || | |||||||||||||||| || ||| ||| Sbjct 1564 TCGTTTTTCATTATGGTGAAAAATGAAACATCT 1532 >seq3970 Length=1147 Score = 80.6 bits (88), Expect = 1e-10 Identities = 54/59 (92%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 22817 ACTCAAAAAATACGCCC-GGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCT 22874 ||||||||||||||| | ||||||||||||||||||||||| ||| |||| |||||||| Sbjct 1147 ACTCAAAAAATACGCACTGGTAGTGATCTTATTTCATTATGATGAGAGTTAGAACCTCT 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184406601481920