Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17438 100 4e-16 >seq17438 Length=17193109 Score = 100 bits (110), Expect = 4e-16 Identities = 261/393 (66%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||| | ||| || | ||| | || |||||||| ||||| |||||||| | || Sbjct 4177750 GGCCAGTTGGTGTGTATAAAATTGATGAGCAGACCCTTAATGTGGGAACCATCCTGGTCC 4177809 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAG----TTCAGAAACATCTTGGTAGTC 182602 ||| ||||| ||||| | ||||||||||| |||||| |||| | || || Sbjct 4177810 TGATCAGTCATGATCATCACCTTGCCATAGCGAAGCGTCTTCAGAT-CATC--GATACTC 4177866 Query 182603 T----TTTC--CTTGT--TGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTTT 182654 |||| ||| | || || |||| |||||| |||| ||||| ||| || Sbjct 4177867 AAATATTTCTTCTTATACTGCAGTCCAATGATCTTGCACAGATTATTGATCTCGGCATTC 4177926 Query 182655 GATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAAC 182714 || || || | | || || || ||||| ||||||||| || || ||| Sbjct 4177927 TCGGTCAGTTGCTTGAAAGTGGCCTCGCGCACATTGAGTAGTTTACCGCGCAGCGGAAAC 4177986 Query 182715 ACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAA 182774 || ||||| | | ||||||| ||| || || | || || | || ||| ||||| Sbjct 4177987 ACGCCGTAATAGTTGCGACCAATGACGCCCAGGCCGGAGACGGCCAAGGATTTTGCCGAG 4178046 Query 182775 TCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCG 182834 |||||||| |||| || || || || | | || | | || ||||||| ||| || Sbjct 4178047 TCACCCTCGGTGAGGATAAGCGTGCATTGTATGGAGTTTTTGGTGCCCGCCTCGTTGGCA 4178106 Query 182835 TCATCCAACTTGGGAATACCGGTAATTTTGGAC 182867 || || | |||||||||||| ||||||||||| Sbjct 4178107 TCCTCTAGCTTGGGAATACCCTTAATTTTGGAC 4178139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627895089024000