Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17438 122 1e-22 >seq17438 Length=17193109 Score = 122 bits (134), Expect = 1e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | ||| || || || ||||| | |||||| || | ||||||||| Sbjct 4176945 ATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTGATATT 4177004 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 |||||| |||| |||| | |||| || |||||||| ||| || || || || || | Sbjct 4177005 GTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACACCTCGC 4177063 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 ||||||| || || ||| | || ||||| | ||| | ||| |||||||||| ||| Sbjct 4177064 CGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCACCTCGC 4177123 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGT 179302 ||| ||| | |||||||| ||||||| || | || ||| |||||||| | Sbjct 4177124 GCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAGGCCAT 4177183 Query 179303 C 179303 | Sbjct 4177184 C 4177184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618300381126400