Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17438 109 6e-19 >seq17438 Length=17193109 Score = 109 bits (120), Expect = 6e-19 Identities = 263/393 (67%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||| | ||| || | ||||| | |||||||| ||||||||||| || | || Sbjct 4177750 GGCCAGTTGGTGTGTATAAAATTGATGAGCAGACCCTTAATGTGGGAACCATCCTGGTCC 4177809 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAGC----TCGGAAACATCTTGATAGTC 169254 ||| ||||||||||| | ||||| |||||| || || |||| |||| || Sbjct 4177810 TGATCAGTCATGATCATCACCTTGCCATAGCGAAGCGTCTTCAGAT-CATC--GATACTC 4177866 Query 169255 C----TTAC--CCTGT--TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTT 169306 || | | | | || || || | |||||| |||| |||| ||| || Sbjct 4177867 AAATATTTCTTCTTATACTGCAGTCCAATGATCTTGCACAGATTATTGATCTCGGCATTC 4177926 Query 169307 GATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAG 169366 || || || ||| || ||| ||||| ||||| || || || || || || Sbjct 4177927 TCGGTCAGTTGCTTGAAAGTGGCCTCGCGCACATTGAGTAGTTTACCGCGCAGCGGAAAC 4177986 Query 169367 ACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAG 169426 || ||||| | | ||||||| |||| || || | ||| || | | || |||||| Sbjct 4177987 ACGCCGTAATAGTTGCGACCAATGACGCCCAGGCCGGAGACGGCCAAGGATTTTGCCGAG 4178046 Query 169427 TCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCA 169486 ||||||||||||| ||| ||||| |||| | || | | || ||||||| ||| ||| Sbjct 4178047 TCACCCTCGGTGAGGATAAGCGTGCATTGTATGGAGTTTTTGGTGCCCGCCTCGTTGGCA 4178106 Query 169487 TCATCCAATTTGGGAATACCAGTAATTTTGGAC 169519 || || | ||||||||||| ||||||||||| Sbjct 4178107 TCCTCTAGCTTGGGAATACCCTTAATTTTGGAC 4178139 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 ||| || || ||| | | ||| ||||| |||||||| | ||||| || | ||||||||| Sbjct 4176945 ATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTGATATT 4177004 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 168575 |||||| |||| |||| | ||||| || |||||||| || || || || || || | Sbjct 4177005 GTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACACCTCGC 4177063 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||| || || ||| | | || || || | ||| | ||| ||||| |||| ||| Sbjct 4177064 CGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCACCTCGC 4177123 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 ||| || | |||||| | | |||| || ||||| || ||| ||||| |||| Sbjct 4177124 GCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAGGCCAT 4177183 Query 168696 CCGCCA 168701 || ||| Sbjct 4177184 CCACCA 4177189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583133649145600