Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq17438 109 6e-19
>seq17438
Length=17193109
Score = 109 bits (120), Expect = 6e-19
Identities = 263/393 (67%), Gaps = 15/393 (4%)
Strand=Plus/Plus
Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198
|||||| | ||| || | ||||| | |||||||| ||||||||||| || | ||
Sbjct 4177750 GGCCAGTTGGTGTGTATAAAATTGATGAGCAGACCCTTAATGTGGGAACCATCCTGGTCC 4177809
Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAGC----TCGGAAACATCTTGATAGTC 169254
||| ||||||||||| | ||||| |||||| || || |||| |||| ||
Sbjct 4177810 TGATCAGTCATGATCATCACCTTGCCATAGCGAAGCGTCTTCAGAT-CATC--GATACTC 4177866
Query 169255 C----TTAC--CCTGT--TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTT 169306
|| | | | | || || || | |||||| |||| |||| ||| ||
Sbjct 4177867 AAATATTTCTTCTTATACTGCAGTCCAATGATCTTGCACAGATTATTGATCTCGGCATTC 4177926
Query 169307 GATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAG 169366
|| || || ||| || ||| ||||| ||||| || || || || || ||
Sbjct 4177927 TCGGTCAGTTGCTTGAAAGTGGCCTCGCGCACATTGAGTAGTTTACCGCGCAGCGGAAAC 4177986
Query 169367 ACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAG 169426
|| ||||| | | ||||||| |||| || || | ||| || | | || ||||||
Sbjct 4177987 ACGCCGTAATAGTTGCGACCAATGACGCCCAGGCCGGAGACGGCCAAGGATTTTGCCGAG 4178046
Query 169427 TCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCA 169486
||||||||||||| ||| ||||| |||| | || | | || ||||||| ||| |||
Sbjct 4178047 TCACCCTCGGTGAGGATAAGCGTGCATTGTATGGAGTTTTTGGTGCCCGCCTCGTTGGCA 4178106
Query 169487 TCATCCAATTTGGGAATACCAGTAATTTTGGAC 169519
|| || | ||||||||||| |||||||||||
Sbjct 4178107 TCCTCTAGCTTGGGAATACCCTTAATTTTGGAC 4178139
Score = 104 bits (114), Expect = 3e-17
Identities = 172/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516
||| || || ||| | | ||| ||||| |||||||| | ||||| || | |||||||||
Sbjct 4176945 ATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTGATATT 4177004
Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 168575
|||||| |||| |||| | ||||| || |||||||| || || || || || || |
Sbjct 4177005 GTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACACCTCGC 4177063
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635
|||| || || ||| | | || || || | ||| | ||| ||||| |||| |||
Sbjct 4177064 CGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCACCTCGC 4177123
Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695
||| || | |||||| | | |||| || ||||| || ||| ||||| ||||
Sbjct 4177124 GCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAGGCCAT 4177183
Query 168696 CCGCCA 168701
|| |||
Sbjct 4177184 CCACCA 4177189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583133649145600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |