Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 93.3 5e-14
seq17434 84.2 2e-11
>seq17439
Length=18325388
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTG 60060
||| ||||| |||||||| ||| ||| || | || |||||||| ||||||||||
Sbjct 9056721 CGTCGAAGGCATCTTCTTTAGCGGCA-GTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTG 9056663
Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120
|||| ||||| || |||| |||||| |||||||| || ||||| || ||||| || |||
Sbjct 9056662 GCCTAATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATT 9056603
Query 60121 AGGAGTTTGCAGT 60133
|| ||||| ||
Sbjct 9056602 GCGACTTTGCGGT 9056590
>seq17434
Length=8399593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 180/269 (67%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374
||||| | ||||| || |||| || |||||||||||| ||| ||||| | ||
Sbjct 1623418 ACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCG 1623477
Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434
|| | ||| || || || || ||||| | ||| || || || || || |
Sbjct 1623478 ACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGC 1623537
Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494
||||| | |||| ||| || || | ||| || | || || | |||||||||
Sbjct 1623538 TCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGC 1623597
Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCC 79554
|||| ||||||||| || | |||| ||||| ||||| ||||| | || || || |||
Sbjct 1623598 TCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCC 1623657
Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCAC 79583
|| ||||| || || ||||| |||||
Sbjct 1623658 ACATTATTGAATACACGCAGCATTGGCAC 1623686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548405221593600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |