Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17439 93.3 5e-14 seq17434 84.2 2e-11 >seq17439 Length=18325388 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTG 60060 ||| ||||| |||||||| ||| ||| || | || |||||||| |||||||||| Sbjct 9056721 CGTCGAAGGCATCTTCTTTAGCGGCA-GTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTG 9056663 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 |||| ||||| || |||| |||||| |||||||| || ||||| || ||||| || ||| Sbjct 9056662 GCCTAATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATT 9056603 Query 60121 AGGAGTTTGCAGT 60133 || ||||| || Sbjct 9056602 GCGACTTTGCGGT 9056590 >seq17434 Length=8399593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374 ||||| | ||||| || |||| || |||||||||||| ||| ||||| | || Sbjct 1623418 ACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCG 1623477 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 || | ||| || || || || ||||| | ||| || || || || || | Sbjct 1623478 ACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGC 1623537 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 ||||| | |||| ||| || || | ||| || | || || | ||||||||| Sbjct 1623538 TCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGC 1623597 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCC 79554 |||| ||||||||| || | |||| ||||| ||||| ||||| | || || || ||| Sbjct 1623598 TCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCC 1623657 Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 || ||||| || || ||||| ||||| Sbjct 1623658 ACATTATTGAATACACGCAGCATTGGCAC 1623686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548405221593600