Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17438 114 1e-20 seq17434 93.3 5e-14 >seq17438 Length=17193109 Score = 114 bits (126), Expect = 1e-20 Identities = 188/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| || ||| ||| ||||| || | | ||| |||||||| || Sbjct 4176919 GTGAAAATATAACGAGCACTCGCACAATCTTTGCCGCCCGTCAAACGTGTACCGAACTGA 4176978 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||| | || | ||||| | ||||||| |||| || |||| || ||| Sbjct 4176979 CCGCGTGGCTCCAGCAAATTGATATTGTTTGAGCCCACATAGTTCTGCGCCAGATTCACA 4177038 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || | |||| || || ||||| || | | || ||||| | ||| Sbjct 4177039 ATCGTCATCTGCAGCGACACCTCGCCGTGATGATAGGCAGACATTTCGGCCACCGAACCC 4177098 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | |||||||||||||||| || | | ||| ||||| ||| | | ||||| Sbjct 4177099 GATAGCTGAGCCACCTTCACCTCGCGCTTATCGTTACGCTTGAAGCACGTGAACATCACT 4177158 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 |||||||| | || || || |||||| ||| Sbjct 4177159 TTGCGCTGGCCAGGTTTGAGGCCATCCACCA 4177189 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 152912 CATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTG 152971 |||| ||||||| || || | ||||| || || |||||| | | || || || || | Sbjct 4177922 CATTCTCGGTCAGTTGCTTGAAAGTGGCCTCGCGCACATTGAGTAGTTTACCGCGCAGCG 4177981 Query 152972 GAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCG 153031 ||||||||||| | |||||| || | |||| ||| |||| | || | || ||| | Sbjct 4177982 GAAACACGCCGTAATAGTTGCGACCAATGACGCCCAGGCCGGAGACGGCCAAGGATTTTG 4178041 Query 153032 CCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGT 153091 |||||||||||||||||| |||||||| || | || | || || ||| || Sbjct 4178042 CCGAGTCACCCTCGGTGAGGATAAGCGTGCATTGTATGGAGTTTTTGGTGCCCGCCTCGT 4178101 Query 153092 TGGCGTCGTCAAGCTTGGGGATTCCC 153117 |||| || || |||||||| || ||| Sbjct 4178102 TGGCATCCTCTAGCTTGGGAATACCC 4178127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | || || ||| ||||| || | || || || || ||||| Sbjct 4176919 GTGAAAATATAACGAGCACTCGCACAATCTTTGCCGCCCGTCAAACGTGTACCGAACTGA 4176978 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || | |||| ||||| | |||||| | ||||| |||| ||||||| Sbjct 4176979 CCGCGTGGCTCCAGCAAATTGATATTGTTTGAGCCCACATAGTTCTGCGCCAGATTCACA 4177038 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||| |||||| | | || ||||| ||||| || | | || || | | ||| Sbjct 4177039 ATCGTCATCTGCAGCGACACCTCGCCGTGATGATAGGCAGACATTTCGGCCACCGAACCC 4177098 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 | | ||| |||||||||| || | | ||| ||||| || | | | ||||| Sbjct 4177099 GATAGCTGAGCCACCTTCACCTCGCGCTTATCGTTACGCTTGAAGCACGTGAACATCACT 4177158 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299 ||||||||| ||||| | || ||||||| Sbjct 4177159 TTGCGCTGGCCAGGTTTGAGGCCATCCACCA 4177189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118146 CATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTG 118205 |||| || |||| || || | ||||| || || || ||| | | ||||| ||||| | Sbjct 4177922 CATTCTCGGTCAGTTGCTTGAAAGTGGCCTCGCGCACATTGAGTAGTTTACCGCGCAGCG 4177981 Query 118206 GAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCG 118265 |||||||||| | | || || || | |||| || ||||| | || | || || | Sbjct 4177982 GAAACACGCCGTAATAGTTGCGACCAATGACGCCCAGGCCGGAGACGGCCAAGGATTTTG 4178041 Query 118266 CCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAAT 118325 |||||||||||||||| | ||||| ||||| | || | | || || ||| | Sbjct 4178042 CCGAGTCACCCTCGGTGAGGATAAGCGTGCATTGTATGGAGTTTTTGGTGCCCGCCTCGT 4178101 Query 118326 TAGCATCATCCAGCTTCGGAACGCCCGTAAT 118356 | ||||| || ||||| |||| ||| |||| Sbjct 4178102 TGGCATCCTCTAGCTTGGGAATACCCTTAAT 4178132 >seq17434 Length=8399593 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||| || ||||| || ||||| ||||||||||| || |||||||| || |||||||| Sbjct 1622723 CGCAATTCTCTGCTTGTTGCGCCCATGCCAACCGCATCTACGGCTCAAATAATGGGCAAT 1622664 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || || |||| |||||||| || | ||||||||| Sbjct 1622663 AATGAATCGTTTGAGCCGTATACCTCAAACATCTAC 1622628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547096706912000