Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17440 163 2e-35 seq17434 149 5e-31 seq17436 138 1e-27 seq17438 132 4e-26 >seq17440 Length=24565398 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || ||| | ||||||||||| | Sbjct 434851 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAGC 434792 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| ||||| || || || || || ||||| Sbjct 434791 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAG 434732 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 434731 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 434672 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||||||||| | || |||||| ||||| ||||||||||| Sbjct 434671 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGTCTGCGGGGTGGC 434624 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || ||||| || || ||||| ||| Sbjct 435535 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCC 435476 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||||||||| || || || || || || ||| Sbjct 435475 GATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAA 435416 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| |||||||| || ||| | ||||| || ||| Sbjct 435415 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 435356 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||||| | ||| | |||| || || Sbjct 435355 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAAT 435306 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || ||||| || || ||||| ||| Sbjct 435991 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCC 435932 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||||||||| || || || || || || ||| Sbjct 435931 GATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAA 435872 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| |||||||| || ||| | ||||| || ||| Sbjct 435871 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 435812 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||||| | ||| | |||| || || Sbjct 435811 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAAT 435762 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || |||| |||||| | || ||| | |||||||| || | Sbjct 435763 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 435704 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| ||||| || || || || || |||||| Sbjct 435703 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 435644 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || || || ||| | ||||| || ||| Sbjct 435643 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 435584 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| ||||||||||| | || |||||| | ||| Sbjct 435583 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGT 435548 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || |||| |||||| | || ||| | |||||||| || | Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| ||||| || || || || || |||||| Sbjct 436159 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 436100 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || || || ||| | ||||| || ||| Sbjct 436099 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 436040 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| ||||||||||| | || |||||| | ||| Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGT 436004 >seq17434 Length=8399593 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | || |||||||| || |||||||| Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || || || ||||||||||| || || || ||||| Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || ||||| ||||||||||| || || |||| ||||||||| Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || || || ||||| | || | || ||||| Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 1558167 >seq17436 Length=11997470 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| |||||| | || || | || ||||| || || Sbjct 6692623 CATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692682 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6692683 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692742 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || ||||||| | || |||| |||||||| Sbjct 6692743 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692802 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || ||||| | ||| |||| |||||||| Sbjct 6692803 CATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGGCAT 6692853 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| |||||| | || || | || ||||| || || Sbjct 6693079 CATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693138 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6693139 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693198 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || ||||||| | || |||| |||||||| Sbjct 6693199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693258 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || ||||| | || |||| |||||||| Sbjct 6693259 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693309 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| | || || | || ||||| || ||| Sbjct 6691940 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6691999 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6692000 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692059 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 6692060 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692119 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || |||| ||||| | || |||| |||||||| Sbjct 6692120 ATCCAGAAGGAGTCCACTCTACACTTGGTGCTCCGCCTGCGTGGTGGCAT 6692169 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| |||||| | || || | || ||||| || || Sbjct 6692167 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692226 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6692227 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692286 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || ||||||| | || |||| |||||||| Sbjct 6692287 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692346 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || ||||| | ||| |||| |||||||| Sbjct 6692347 CATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGGCAT 6692397 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| |||||| | || || | || ||||| || || Sbjct 6692851 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692910 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6692911 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692970 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || ||||||| | || |||| |||||||| Sbjct 6692971 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693030 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || ||||| | || |||| |||||||| Sbjct 6693031 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693081 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| |||||| | || || | || ||||| || || Sbjct 6693307 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693366 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6693367 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693426 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || ||||||| | || |||| |||||||| Sbjct 6693427 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693486 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || ||||| | || |||| |||||||| Sbjct 6693487 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693537 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| |||||| | || || | || ||||| || || Sbjct 6693535 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693594 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 6693595 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693654 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || ||||||| | || |||| |||||||| Sbjct 6693655 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693714 Query 27167 CATTCAAAAGGAGTC 27181 ||| || |||||||| Sbjct 6693715 CATCCAGAAGGAGTC 6693729 >seq17438 Length=17193109 Score = 132 bits (146), Expect = 4e-26 Identities = 173/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 26981 ATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGG 27039 ||||| || |||| || ||||| || || || ||||| ||| | || || | || |||| Sbjct 16961515 ATACGACAATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGG 16961456 Query 27040 AACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC 27099 | || || ||| | || |||| || || || ||||| ||||| || || || || | Sbjct 16961455 AGCCCTCGGACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCC 16961396 Query 27100 CCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159 | ||||| |||||||| || | |||||||| || ||||||| | ||| | |||| Sbjct 16961395 CAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCG 16961336 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||| || ||||||||||| | || ||||| | ||| |||| |||||||| Sbjct 16961335 ACTACAACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTGCGCGGTGGCAT 16961278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434823587788800