Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 163 2e-35
seq17434 149 5e-31
seq17436 138 1e-27
seq17438 132 4e-26
>seq17440
Length=24565398
Score = 163 bits (180), Expect = 2e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || ||| | || ||| | ||||||||||| |
Sbjct 434851 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAGC 434792
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| |||||||| ||||| || || || || || |||||
Sbjct 434791 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAG 434732
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 434731 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 434672
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || ||||||||||| | || |||||| ||||| |||||||||||
Sbjct 434671 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGTCTGCGGGGTGGC 434624
Score = 149 bits (164), Expect = 5e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || ||| | || ||||| || || ||||| |||
Sbjct 435535 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCC 435476
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || || ||||||||||| || || || || || || |||
Sbjct 435475 GATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAA 435416
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| ||||| |||||||| || ||| | ||||| || |||
Sbjct 435415 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 435356
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || |||||| | ||| | |||| || ||
Sbjct 435355 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAAT 435306
Score = 149 bits (164), Expect = 5e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || ||| | || ||||| || || ||||| |||
Sbjct 435991 ATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCC 435932
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || || ||||||||||| || || || || || || |||
Sbjct 435931 GATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAA 435872
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| ||||| |||||||| || ||| | ||||| || |||
Sbjct 435871 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 435812
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || |||||| | ||| | |||| || ||
Sbjct 435811 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAAT 435762
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| |||||||| || |||| |||||| | || ||| | |||||||| || |
Sbjct 435763 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 435704
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| |||||||| ||||| || || || || || ||||||
Sbjct 435703 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 435644
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | || || || || | || || || ||| | ||||| || |||
Sbjct 435643 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 435584
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
||||| ||||||||||| | || |||||| | |||
Sbjct 435583 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGT 435548
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| |||||||| || |||| |||||| | || ||| | |||||||| || |
Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| |||||||| ||||| || || || || || ||||||
Sbjct 436159 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 436100
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | || || || || | || || || ||| | ||||| || |||
Sbjct 436099 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 436040
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
||||| ||||||||||| | || |||||| | |||
Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGT 436004
>seq17434
Length=8399593
Score = 149 bits (164), Expect = 5e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| || || || ||| | || |||||||| || ||||||||
Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | |||||| || || || ||||||||||| || || || |||||
Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||||||||| | || ||||| ||||||||||| || || |||| |||||||||
Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| || ||||| || || || ||||| | || | || |||||
Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 1558167
>seq17436
Length=11997470
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || |||||| |||| |||||| | || || | || ||||| || ||
Sbjct 6692623 CATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692682
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6692683 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692742
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||||||| || ||||||| | || |||| ||||||||
Sbjct 6692743 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692802
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || || ||||| || | || ||||| | ||| |||| ||||||||
Sbjct 6692803 CATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGGCAT 6692853
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || |||||| |||| |||||| | || || | || ||||| || ||
Sbjct 6693079 CATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693138
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6693139 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693198
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||||||| || ||||||| | || |||| ||||||||
Sbjct 6693199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693258
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | || ||||| | || |||| ||||||||
Sbjct 6693259 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693309
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||| |||| |||||| | || || | || ||||| || |||
Sbjct 6691940 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6691999
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6692000 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692059
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||||| || ||||||| | || |||| |||||||||
Sbjct 6692060 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692119
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || |||| ||||| | || |||| ||||||||
Sbjct 6692120 ATCCAGAAGGAGTCCACTCTACACTTGGTGCTCCGCCTGCGTGGTGGCAT 6692169
Score = 129 bits (142), Expect = 5e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| |||| |||||| | || || | || ||||| || ||
Sbjct 6692167 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692226
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6692227 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692286
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||||| || ||||||| | || |||| ||||||||
Sbjct 6692287 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692346
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || || ||||| || | || ||||| | ||| |||| ||||||||
Sbjct 6692347 CATCCAGAAAGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGGCAT 6692397
Score = 129 bits (142), Expect = 5e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| |||| |||||| | || || | || ||||| || ||
Sbjct 6692851 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6692910
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6692911 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692970
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||||| || ||||||| | || |||| ||||||||
Sbjct 6692971 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693030
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | || ||||| | || |||| ||||||||
Sbjct 6693031 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693081
Score = 129 bits (142), Expect = 5e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| |||| |||||| | || || | || ||||| || ||
Sbjct 6693307 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693366
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6693367 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693426
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||||||| || ||||||| | || |||| ||||||||
Sbjct 6693427 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693486
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | || ||||| | || |||| ||||||||
Sbjct 6693487 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGCAT 6693537
Score = 113 bits (124), Expect = 4e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| |||| |||||| | || || | || ||||| || ||
Sbjct 6693535 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTC 6693594
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||||| || || || || || ||||| || ||||| || || |||||
Sbjct 6693595 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693654
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||||||| || ||||||| | || |||| ||||||||
Sbjct 6693655 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693714
Query 27167 CATTCAAAAGGAGTC 27181
||| || ||||||||
Sbjct 6693715 CATCCAGAAGGAGTC 6693729
>seq17438
Length=17193109
Score = 132 bits (146), Expect = 4e-26
Identities = 173/238 (73%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 26981 ATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGG 27039
||||| || |||| || ||||| || || || ||||| ||| | || || | || ||||
Sbjct 16961515 ATACGACAATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGG 16961456
Query 27040 AACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC 27099
| || || ||| | || |||| || || || ||||| ||||| || || || || |
Sbjct 16961455 AGCCCTCGGACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCC 16961396
Query 27100 CCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159
| ||||| |||||||| || | |||||||| || ||||||| | ||| | ||||
Sbjct 16961395 CAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCG 16961336
Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| |||||||| || ||||||||||| | || ||||| | ||| |||| ||||||||
Sbjct 16961335 ACTACAACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTGCGCGGTGGCAT 16961278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434823587788800
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