Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17438 232 6e-56 >seq17438 Length=17193109 Score = 232 bits (256), Expect = 6e-56 Identities = 435/634 (69%), Gaps = 8/634 (1%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| ||| || || || ||| | |||| || ||| | | | | | || | || || Sbjct 3984245 GAGCTTGGGAAATGGACGTGGCACACGTTTCATCTGCTCCTGCAACGGTTCCACATGATT 3984304 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618 ||| |||| |||| ||| |||| ||| || || | || ||||| || ||| || Sbjct 3984305 CAGATAGACGTGCGTATCGCCCATCGTGTGTACAAAGTCGCCAGGCTTCAGACCCGTCAC 3984364 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| || ||||| || |||||||| ||||| || |||||||| || || |||| || Sbjct 3984365 ATGTGCAATCATATAGGTGAGCAGGGCGTAGGATGCGATGTTGAAGGGAACACCTAGACC 3984424 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC-CCCATTC---GCGACGTA-- 6732 |||||| | || ||||| | ||||||||| ||||| ||| || ||||| | Sbjct 3984425 CATGTCGGCACTGCGCTGATACATCTGGCAGGAGAGCTCGCCCCTTGACTGCGACACAAA 3984484 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 |||||| ||| ||||||||| || ||||||||| ||| | |||| ||| ||||| Sbjct 3984485 GAATTGCACCAGGCAGTGGCACGGTGGCAGCGCCATCTTAGGTATATCCAACGGATTCCA 3984544 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCC-GCTTCAAGGTGTCGATCACGTACT 6851 ||| |||| | ||| | | || | || || || | | |||||| ||||| | || Sbjct 3984545 TGCGGACATTATGATGCGACGATCCGCGGGATTGTTGCGT-ATGGTGTCAATCACCTGCT 3984603 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||| |||||| | ||||| || | |||||| | |||| || |||||||| ||||||| Sbjct 3984604 GCAACTGGTCGACGCCCTGGCCTGTATAGTCGTCATCGCAGCCGCGATACTCGGCCCCAA 3984663 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||||||||| ||||| || || |||| || ||||| || ||| || | | Sbjct 3984664 AGTGACGCCACTGGAAACCGTACACGGGACCCAGATCTCCCTCATCGCGATCTGTGTGAC 3984723 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 | | ||||| || || || |||| | || |||||||| | |||| | | | Sbjct 3984724 CGCATTTGTCGAGGAACTCGCGAGTGCTGTTGAAATCCCAGATGTGCACCTTCTTCGCCT 3984783 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 | | ||||| ||||| || ||| ||||||| || |||||| | ||||| Sbjct 3984784 GCAACAACTTGGCATTCGTTTTGCCGGCCACAAACCACAACAACTCCTCTGCGACGCCAC 3984843 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || | || ||||| || |||||||| ||||| Sbjct 3984844 GGAAGAAGACCCGTTTGGTGGTCAGCAGTGGAAA 3984877 Score = 232 bits (256), Expect = 6e-56 Identities = 435/634 (69%), Gaps = 8/634 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||| || ||||| || | || ||||| | |||||| || ||||| Sbjct 3984877 TTTCCACTGCTGACCACCAAACGGGTCTTCTTCCGTGGCGTCGCAGAGGAGTTGTTGTGG 3984818 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || ||| || ||||| ||||| | | | | | |||| | |||||||| Sbjct 3984817 TTTGTGGCCGGCAAAACGAATGCCAAGTTGTTGCAGGCGAAGAAGGTGCACATCTGGGAT 3984758 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 || | |||| || || || ||||| | || | || ||| || ||||| || Sbjct 3984757 TTCAACAGCACTCGCGAGTTCCTCGACAAATGCGGTCACACAGATCGCGATGAGGGAGAT 3984698 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||| || || ||||| ||||||||| | ||||||||||| |||||||| || |||| Sbjct 3984697 CTGGGTCCCGTGTACGGTTTCCAGTGGCGTCACTTTGGGGCCGAGTATCGCGGCTGCGAT 3984638 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC-G 34518 | |||||| | || ||||| | |||||| ||||| | ||||| |||||| | | || Sbjct 3984637 GACGACTATACAGGCCAGGGCGTCGACCAGTTGCAGCAGGTGATTGACACCAT-ACGCAA 3984579 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || || | || | | ||| | |||| ||| ||||| ||| |||| | ||| ||| Sbjct 3984578 CAATCCCGCGGATCGTCGCATCATAATGTCCGCATGGAATCCGTTGGATATACCTAAGAT 3984519 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC--TACGTCGC---GAATGGG-GAGCT 34632 |||||| || ||||||||| ||| |||||| | ||||| || ||| ||||| Sbjct 3984518 GGCGCTGCCACCGTGCCACTGCCTGGTGCAATTCTTTGTGTCGCAGTCAAGGGGCGAGCT 3984459 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||||||| | ||||| || | |||||||| |||| || || |||||||| || Sbjct 3984458 CTCCTGCCAGATGTATCAGCGCAGTGCCGACATGGGTCTAGGTGTTCCCTTCAACATCGC 3984399 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||||| |||||||| || ||||| || ||||| ||| || ||||| || | Sbjct 3984398 ATCCTACGCCCTGCTCACCTATATGATTGCACATGTGACGGGTCTGAAGCCTGGCGACTT 3984339 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || || ||| |||| ||| |||| |||| ||||| || | || | | | | | || Sbjct 3984338 TGTACACACGATGGGCGATACGCACGTCTATCTGAATCATGTGGAACCGTTGCAGGAGCA 3984279 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 | || |||| | ||| || || || ||| ||||| Sbjct 3984278 GATGAAACGTGTGCCACGTCCATTTCCCAAGCTC 3984245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448164678796800