Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq17438 232 6e-56
>seq17438
Length=17193109
Score = 232 bits (256), Expect = 6e-56
Identities = 435/634 (69%), Gaps = 8/634 (1%)
Strand=Plus/Plus
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
||||| ||| || || || ||| | |||| || ||| | | | | | || | || ||
Sbjct 3984245 GAGCTTGGGAAATGGACGTGGCACACGTTTCATCTGCTCCTGCAACGGTTCCACATGATT 3984304
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618
||| |||| |||| ||| |||| ||| || || | || ||||| || ||| ||
Sbjct 3984305 CAGATAGACGTGCGTATCGCCCATCGTGTGTACAAAGTCGCCAGGCTTCAGACCCGTCAC 3984364
Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678
||| || ||||| || |||||||| ||||| || |||||||| || || |||| ||
Sbjct 3984365 ATGTGCAATCATATAGGTGAGCAGGGCGTAGGATGCGATGTTGAAGGGAACACCTAGACC 3984424
Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC-CCCATTC---GCGACGTA-- 6732
|||||| | || ||||| | ||||||||| ||||| ||| || ||||| |
Sbjct 3984425 CATGTCGGCACTGCGCTGATACATCTGGCAGGAGAGCTCGCCCCTTGACTGCGACACAAA 3984484
Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792
|||||| ||| ||||||||| || ||||||||| ||| | |||| ||| |||||
Sbjct 3984485 GAATTGCACCAGGCAGTGGCACGGTGGCAGCGCCATCTTAGGTATATCCAACGGATTCCA 3984544
Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCC-GCTTCAAGGTGTCGATCACGTACT 6851
||| |||| | ||| | | || | || || || | | |||||| ||||| | ||
Sbjct 3984545 TGCGGACATTATGATGCGACGATCCGCGGGATTGTTGCGT-ATGGTGTCAATCACCTGCT 3984603
Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911
||| |||||| | ||||| || | |||||| | |||| || |||||||| |||||||
Sbjct 3984604 GCAACTGGTCGACGCCCTGGCCTGTATAGTCGTCATCGCAGCCGCGATACTCGGCCCCAA 3984663
Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971
|||| | ||||||||| ||||| || || |||| || ||||| || ||| || | |
Sbjct 3984664 AGTGACGCCACTGGAAACCGTACACGGGACCCAGATCTCCCTCATCGCGATCTGTGTGAC 3984723
Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031
| | ||||| || || || |||| | || |||||||| | |||| | | |
Sbjct 3984724 CGCATTTGTCGAGGAACTCGCGAGTGCTGTTGAAATCCCAGATGTGCACCTTCTTCGCCT 3984783
Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091
| | ||||| ||||| || ||| ||||||| || |||||| | |||||
Sbjct 3984784 GCAACAACTTGGCATTCGTTTTGCCGGCCACAAACCACAACAACTCCTCTGCGACGCCAC 3984843
Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125
|| | || ||||| || |||||||| |||||
Sbjct 3984844 GGAAGAAGACCCGTTTGGTGGTCAGCAGTGGAAA 3984877
Score = 232 bits (256), Expect = 6e-56
Identities = 435/634 (69%), Gaps = 8/634 (1%)
Strand=Plus/Minus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
||||| |||||||| || ||||| || | || ||||| | |||||| || |||||
Sbjct 3984877 TTTCCACTGCTGACCACCAAACGGGTCTTCTTCCGTGGCGTCGCAGAGGAGTTGTTGTGG 3984818
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339
|| ||| || ||||| ||||| | | | | | |||| | ||||||||
Sbjct 3984817 TTTGTGGCCGGCAAAACGAATGCCAAGTTGTTGCAGGCGAAGAAGGTGCACATCTGGGAT 3984758
Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399
|| | |||| || || || ||||| | || | || ||| || ||||| ||
Sbjct 3984757 TTCAACAGCACTCGCGAGTTCCTCGACAAATGCGGTCACACAGATCGCGATGAGGGAGAT 3984698
Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459
|||| || || ||||| ||||||||| | ||||||||||| |||||||| || ||||
Sbjct 3984697 CTGGGTCCCGTGTACGGTTTCCAGTGGCGTCACTTTGGGGCCGAGTATCGCGGCTGCGAT 3984638
Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC-G 34518
| |||||| | || ||||| | |||||| ||||| | ||||| |||||| | | ||
Sbjct 3984637 GACGACTATACAGGCCAGGGCGTCGACCAGTTGCAGCAGGTGATTGACACCAT-ACGCAA 3984579
Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578
|| || | || | | ||| | |||| ||| ||||| ||| |||| | ||| |||
Sbjct 3984578 CAATCCCGCGGATCGTCGCATCATAATGTCCGCATGGAATCCGTTGGATATACCTAAGAT 3984519
Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC--TACGTCGC---GAATGGG-GAGCT 34632
|||||| || ||||||||| ||| |||||| | ||||| || ||| |||||
Sbjct 3984518 GGCGCTGCCACCGTGCCACTGCCTGGTGCAATTCTTTGTGTCGCAGTCAAGGGGCGAGCT 3984459
Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692
||||||||| | ||||| || | |||||||| |||| || || |||||||| ||
Sbjct 3984458 CTCCTGCCAGATGTATCAGCGCAGTGCCGACATGGGTCTAGGTGTTCCCTTCAACATCGC 3984399
Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752
||||| |||||||| || ||||| || ||||| ||| || ||||| || |
Sbjct 3984398 ATCCTACGCCCTGCTCACCTATATGATTGCACATGTGACGGGTCTGAAGCCTGGCGACTT 3984339
Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| || ||| |||| ||| |||| |||| ||||| || | || | | | | | ||
Sbjct 3984338 TGTACACACGATGGGCGATACGCACGTCTATCTGAATCATGTGGAACCGTTGCAGGAGCA 3984279
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846
| || |||| | ||| || || || ||| |||||
Sbjct 3984278 GATGAAACGTGTGCCACGTCCATTTCCCAAGCTC 3984245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448164678796800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |