Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 86.0 4e-12
seq17434 86.0 4e-12
>seq17440
Length=24565398
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || | || || ||||||||||| |||||
Sbjct 434758 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAA 434699
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||||||| ||||| ||||| || ||| ||| | || |||||| ||
Sbjct 434698 GATGGTCGCACCTTGTCCGACTACAATATCCAGAAGGAGTCGACTCTCCACTTGGTTCTG 434639
Query 28003 CGTTTGCGTGGCGGC 28017
||| |||| || |||
Sbjct 434638 CGTCTGCGGGGTGGC 434624
>seq17434
Length=8399593
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || ||||| || || || || || || |||| |||||| ||
Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAA----CC 1557996
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| || ||| |||| |||||| || || ||||||||||| |||| |
Sbjct 1557997 GTCGGA-TACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAG 1558055
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || ||||| ||||| || || |||||||| || | |||| | || ||||
Sbjct 1558056 ATCAGCAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATT 1558115
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || |||||| || ||||| ||||| | || | ||||| ||
Sbjct 1558116 ACAACATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 1558167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355786761446880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |