Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17440 86.0 4e-12 seq17434 86.0 4e-12 >seq17440 Length=24565398 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||||||||| ||||| Sbjct 434758 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAA 434699 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| ||||| ||||| || ||| ||| | || |||||| || Sbjct 434698 GATGGTCGCACCTTGTCCGACTACAATATCCAGAAGGAGTCGACTCTCCACTTGGTTCTG 434639 Query 28003 CGTTTGCGTGGCGGC 28017 ||| |||| || ||| Sbjct 434638 CGTCTGCGGGGTGGC 434624 >seq17434 Length=8399593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || || || || || |||| |||||| || Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAA----CC 1557996 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||| |||| |||||| || || ||||||||||| |||| | Sbjct 1557997 GTCGGA-TACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAG 1558055 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || ||||| ||||| || || |||||||| || | |||| | || |||| Sbjct 1558056 ATCAGCAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATT 1558115 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || |||||| || ||||| ||||| | || | ||||| || Sbjct 1558116 ACAACATTCAGAAAGAGTCAACATTGCACTTGGTGCTCCGCCTTCGTGGTGG 1558167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355786761446880