Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq17436 167 5e-36 seq17434 161 2e-34 seq17438 154 3e-32 seq17440 127 5e-24 >seq17436 Length=11997470 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| ||||| | ||| || | ||||||| Sbjct 6693519 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693460 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||||||| Sbjct 6693459 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6693400 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||||| || ||||| | ||||| ||| Sbjct 6693399 TGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTC 6693340 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 6693339 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||||||||| |||||||| ||||| | ||| || | ||||||| Sbjct 6692379 AGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6692320 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || || || || |||| || ||||||||| Sbjct 6692319 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692260 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || || || ||||| | ||||| ||| Sbjct 6692259 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692200 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 6692199 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||||||||| |||||||| ||||| | ||| || | ||||||| Sbjct 6692835 AGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6692776 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||||||| Sbjct 6692775 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692716 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || || || ||||| | ||||| ||| Sbjct 6692715 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692656 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || || || | |||||| Sbjct 6692655 TTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| ||||| | ||| || | ||||||| Sbjct 6693291 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693232 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||||||| Sbjct 6693231 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6693172 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||||| || ||||| | ||||| ||| Sbjct 6693171 TGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTC 6693112 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || || || | |||||| Sbjct 6693111 TTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| ||||| | ||| || | ||||||| Sbjct 6692151 AGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6692092 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || || || || |||| || ||||||||| Sbjct 6692091 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692032 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || || || ||||| | ||||| ||| Sbjct 6692031 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6691972 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | |||||| || || | |||||| || Sbjct 6691971 TTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 6691937 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || ||||| || ||||| | ||| || | ||||||| Sbjct 6692607 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCT 6692548 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||||||| Sbjct 6692547 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692488 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || || || ||||| | ||||| ||| Sbjct 6692487 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692428 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 6692427 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| ||||| | ||| || | ||||||| Sbjct 6693063 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693004 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || || || || |||| || ||||||||| Sbjct 6693003 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692944 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || || || ||||| | ||||| ||| Sbjct 6692943 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692884 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 6692883 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 154 bits (170), Expect = 3e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 |||||| || |||||||| ||||| | ||| || | ||||||||||||||||||||| || Sbjct 6693730 GGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGC 6693671 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 |||||| || || || || || || |||| || ||||||||||||||||| ||||| Sbjct 6693670 GAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 6693611 Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 || || ||||| ||||| || ||||| | ||||| ||||| || || | |||||| Sbjct 6693610 ATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTT 6693551 Query 211100 TACAAACACCTGCAT 211114 || || | |||||| Sbjct 6693550 GACGAAGATCTGCAT 6693536 >seq17434 Length=8399593 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || |||||||| || ||||| ||||| | ||| || Sbjct 1558162 ACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGT 1558103 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||||| || ||||| | || || || || ||||||| ||| Sbjct 1558102 GCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCC 1558043 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||| || ||||||||||| || || ||| ||||| || Sbjct 1558042 TTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 1557983 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| |||||||| || || || || | ||||| Sbjct 1557982 AGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17438 Length=17193109 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | ||||||| Sbjct 16961296 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 16961355 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | || || || || || |||| ||| ||||||||| Sbjct 16961356 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 16961415 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| || ||||| | ||||| ||| Sbjct 16961416 TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTC 16961475 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| ||||| | |||||| Sbjct 16961476 TTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 >seq17440 Length=24565398 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || |||||||| || | | ||| | ||||| Sbjct 435552 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTACGACCATCC 435611 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | || ||||| || ||||||| ||| ||||||||| Sbjct 435612 TCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGAATTCCCTCCTTGTCC 435671 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || ||||| || ||||| | || || || | |||||| ||| Sbjct 435672 TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACTTCTAAAGTGATGGTC 435731 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||||||||| | ||||||| Sbjct 435732 TTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || |||||||| || | | ||| | ||||| Sbjct 436008 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTACGACCATCC 436067 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | || ||||| || ||||||| ||| ||||||||| Sbjct 436068 TCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGAATTCCCTCCTTGTCC 436127 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || ||||| || ||||| | || || || | |||||| ||| Sbjct 436128 TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACTTCTAAAGTGATGGTC 436187 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||||||||| | |||||| || Sbjct 436188 TTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || ||||| || || || | | ||| | |||||| Sbjct 434640 AGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGACAAGGTGCGACCATCT 434699 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || |||||||| || || || || || ||||||| ||| ||||||||| Sbjct 434700 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCC 434759 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || || || ||||| || ||||| ||| ||| || || | |||||| Sbjct 434760 TGAATTTTAGCCTTGACATTTTCAATAGTGTC---GCTAGGTTCCACTTCCAAAGTGATG 434816 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || || || | ||||||| Sbjct 434817 GTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 434852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158892987485600