Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17436 104 2e-17 seq17440 84.2 2e-11 >seq17436 Length=11997470 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| ||||| ||| ||| || || || || ||||| | ||| || ||| | Sbjct 6692155 GCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCC 6692096 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || ||||||||||| || | ||| | || ||| || Sbjct 6692095 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6692036 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | |||||| | |||||| |||| ||||| Sbjct 6692035 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGAT 6691976 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCttt 39288 | || || |||| || || || || || ||||| ||| Sbjct 6691975 GGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 6691936 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || || ||||| | ||| || ||| | || || Sbjct 6692377 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692318 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || ||||||||||| || | ||| | || ||| |||||| Sbjct 6692317 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692258 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | |||||| | |||||| |||| ||||| | || Sbjct 6692257 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692198 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||| ||||| Sbjct 6692197 GCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || || ||||| | ||| || ||| | || || Sbjct 6692833 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692774 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| |||||| Sbjct 6692773 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692714 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | |||||| | |||||| |||| ||||| | || Sbjct 6692713 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692654 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| || ||||| ||||| Sbjct 6692653 GCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||| || || || || ||||| | ||| || ||| | Sbjct 6693067 GCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCC 6693008 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || ||||||||||| || | ||| | || ||| || Sbjct 6693007 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6692948 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | |||||| | |||||| |||| ||||| Sbjct 6692947 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGAT 6692888 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||| ||||| Sbjct 6692887 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || ||||| ||||| | ||| || ||| | || || Sbjct 6692605 CACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTC 6692546 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| |||||| Sbjct 6692545 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692486 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | |||||| | |||||| |||| ||||| | || Sbjct 6692485 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692426 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||| ||||| Sbjct 6692425 GCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||| || || || || ||||| | ||| || ||| | Sbjct 6693295 GCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCC 6693236 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || ||||||||||| || | ||| | || ||| || Sbjct 6693235 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6693176 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | ||||| | |||||| |||| ||||| Sbjct 6693175 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGAT 6693116 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| ||||| || ||||| ||||| Sbjct 6693115 GGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||| || || || || ||||| | ||| || ||| | Sbjct 6693523 GCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCC 6693464 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || ||||||||||| || | ||| | || ||| || Sbjct 6693463 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6693404 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | ||||| | |||||| |||| ||||| Sbjct 6693403 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGAT 6693344 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||| ||||| Sbjct 6693343 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 >seq17440 Length=24565398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| || |||| |||| || || | || || Sbjct 434643 ACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGACAAG-GTGCGACCATCTTC 434701 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | |||||| || || || || ||||||||||| || | || | | ||| |||||| Sbjct 434702 CAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTG 434761 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| |||| | | | || ||||| | ||||| |||| ||||| | || Sbjct 434762 AATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACTTCCAAAGTGATGGTCTT 434821 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| |||||||| ||||| ||||| Sbjct 434822 TCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429454300082720