Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 147 1e-30
seq17440 114 9e-21
seq17438 109 4e-19
seq17436 102 6e-17
>seq17434
Length=8399593
Score = 147 bits (162), Expect = 1e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || |||||||||||||||||||| || || |||||||| || || || | ||
Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| | ||| || || ||||||||||| | || ||||||||
Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||||||||| ||||| ||||| ||| ||||||| | |||||| | |||||||||
Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || |||||||| ||||| || || ||
Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGT 1558149
>seq17440
Length=24565398
Score = 114 bits (126), Expect = 9e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||||||||| | || ||||| || |||||| | ||||| || | |
Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | || |||||| ||||| || || | || ||||||||
Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || ||||| ||||| ||||||| | ||||| || ||| |||||
Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || ||||| || | || || |||
Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGTT 434642
Score = 109 bits (120), Expect = 4e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||||||||| | || ||||| || |||||||| || ||||| | |
Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| || |||| | || ||| ||||| || || | || ||||| |
Sbjct 435476 CGATACTATTGAGAACGTTAAGGC-CAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 435418
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||| | || || ||||| ||||| ||||||| | ||||| || ||| || |
Sbjct 435417 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435358
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || || ||||| || | || || |||
Sbjct 435357 ACATTCAGAAGGAGTCGACTCTCCACTTGGTT 435326
Score = 109 bits (120), Expect = 4e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||||||||| | || ||||| || |||||||| || ||||| | |
Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| || |||| | || ||| ||||| || || | || ||||| |
Sbjct 435932 CGATACTATTGAGAACGTTAAGGC-CAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 435874
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||| | || || ||||| ||||| ||||||| | ||||| || ||| || |
Sbjct 435873 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435814
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || || ||||| || | || || |||
Sbjct 435813 ACATTCAGAAGGAGTCGACTCTCCACTTGGTT 435782
Score = 102 bits (112), Expect = 6e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||||||||| | || || || || |||||||| || ||||| | |
Sbjct 435308 AATGCAGATCTTCGTTAAAACATTGACTGGGAAGACCATCACTCTGGAGGTTGAACCTTC 435249
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||| || |||| | || || ||||| || || | || ||||| |
Sbjct 435248 CGACACAATTGAGAACGTTAAGGC-CAAGATCCAAGACAAGGAGGGAATCCCCCCAGACC 435190
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || ||||| ||||| ||||||| | ||||| || ||| || |
Sbjct 435189 AGCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435130
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
| || || |||||||| || | || || ||| | | | |||||||||
Sbjct 435129 ATATTCAGAAAGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGAGGAGGA 435080
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || || | || || || || |||||| | ||||| || |||
Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | || |||||| ||||| || || | || ||||||||
Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || ||||| || || || || || || | || || || ||| || ||
Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || ||||| || | || || ||| | | | ||||||||
Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435536
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || || | || || || || |||||| | ||||| || ||
Sbjct 436222 AATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCC 436163
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| |||||| | || |||||| ||||| || || | || ||||||
Sbjct 436162 AGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAT 436103
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|||||||| || || ||||| || || || || || || | || || || ||| ||
Sbjct 436102 CAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTAT 436043
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||||| || || ||||| || | || || ||| | | | ||||||||
Sbjct 436042 AACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435992
>seq17438
Length=17193109
Score = 109 bits (120), Expect = 4e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || ||||| || || || ||||| | || || || || |
Sbjct 16961508 AATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCCTC 16961449
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| |||| | || | || ||||| || || | || |||||||
Sbjct 16961448 GGACACCATCGAGAATGTTAAGGCCAAGA-TTCAGGACAAGGAGGGAATTCCCCCAGATC 16961390
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||||| || ||||||||||| || |||||||| | |||||| | ||| ||||
Sbjct 16961389 AGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACA 16961330
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||| ||
Sbjct 16961329 ACATCCAGAAGGAGTCGAC 16961311
>seq17436
Length=11997470
Score = 102 bits (112), Expect = 6e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || || | || || || || ||||| | || || || |
Sbjct 6691937 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCT 6691996
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || |||| ||| | || | || | | ||||| || || | || |||||
Sbjct 6691997 TCCGATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGA 6692055
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || ||||||||||| || |||||||| | ||||||| | |||||
Sbjct 6692056 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTA 6692115
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||| || || |||||||| |||| || ||
Sbjct 6692116 CAACATCCAGAAGGAGTCCACTCTACACTTGGT 6692148
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || || ||||| | || || || | |
Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692286
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6692287 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692346
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 6692347 CATCCAGAAAGAGTCCAC 6692364
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||| | || || || || ||||| | || || || | |
Sbjct 6692624 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692683
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6692684 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692742
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6692743 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692802
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 6692803 CATCCAGAAAGAGTCCAC 6692820
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || || ||||| | || || || | |
Sbjct 6692852 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692911
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6692912 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692970
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6692971 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693030
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 6693031 CATCCAGAAGGAGTCCAC 6693048
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||| | || || || || ||||| | || || || | |
Sbjct 6693080 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693139
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6693140 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693198
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6693199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693258
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 6693259 CATCCAGAAGGAGTCCAC 6693276
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || || ||||| | || || || | |
Sbjct 6693308 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693367
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6693368 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693426
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6693427 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693486
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 6693487 CATCCAGAAGGAGTCCAC 6693504
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || || ||||| | || || || | |
Sbjct 6693536 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693595
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || || | || ||||||||
Sbjct 6693596 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693654
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || |||||||| | ||||||| | ||||||||
Sbjct 6693655 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693714
Query 23790 CATACAAAAAGAGTCC 23805
||| || || ||||||
Sbjct 6693715 CATCCAGAAGGAGTCC 6693730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337937756059520
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