Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq17434 147 1e-30 seq17440 114 9e-21 seq17438 109 4e-19 seq17436 102 6e-17 >seq17434 Length=8399593 Score = 147 bits (162), Expect = 1e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||||||||| || || |||||||| || || || | || Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || || ||||||||||| | || |||||||| Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| ||||| ||| ||||||| | |||||| | ||||||||| Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| ||||| || || || Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGT 1558149 >seq17440 Length=24565398 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||||||||| | || ||||| || |||||| | ||||| || | | Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || |||||| ||||| || || | || |||||||| Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| ||||| ||||||| | ||||| || ||| ||||| Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGTT 434642 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||||||||| | || ||||| || |||||||| || ||||| | | Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| || |||| | || ||| ||||| || || | || ||||| | Sbjct 435476 CGATACTATTGAGAACGTTAAGGC-CAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 435418 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || || ||||| ||||| ||||||| | ||||| || ||| || | Sbjct 435417 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435358 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || ||||| || | || || ||| Sbjct 435357 ACATTCAGAAGGAGTCGACTCTCCACTTGGTT 435326 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||||||||| | || ||||| || |||||||| || ||||| | | Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| || |||| | || ||| ||||| || || | || ||||| | Sbjct 435932 CGATACTATTGAGAACGTTAAGGC-CAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 435874 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || || ||||| ||||| ||||||| | ||||| || ||| || | Sbjct 435873 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435814 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || ||||| || | || || ||| Sbjct 435813 ACATTCAGAAGGAGTCGACTCTCCACTTGGTT 435782 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||||||||| | || || || || |||||||| || ||||| | | Sbjct 435308 AATGCAGATCTTCGTTAAAACATTGACTGGGAAGACCATCACTCTGGAGGTTGAACCTTC 435249 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| || |||| | || || ||||| || || | || ||||| | Sbjct 435248 CGACACAATTGAGAACGTTAAGGC-CAAGATCCAAGACAAGGAGGGAATCCCCCCAGACC 435190 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| ||||| ||||||| | ||||| || ||| || | Sbjct 435189 AGCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435130 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || |||||||| || | || || ||| | | | ||||||||| Sbjct 435129 ATATTCAGAAAGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGAGGAGGA 435080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || || || || |||||| | ||||| || ||| Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || |||||| ||||| || || | || |||||||| Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||| || || || || || || | || || || ||| || || Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | || || ||| | | | |||||||| Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435536 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || || | || || || || |||||| | ||||| || || Sbjct 436222 AATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCC 436163 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| ||||| || || | || |||||| Sbjct 436162 AGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAT 436103 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| || || ||||| || || || || || || | || || || ||| || Sbjct 436102 CAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTAT 436043 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || ||||| || | || || ||| | | | |||||||| Sbjct 436042 AACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435992 >seq17438 Length=17193109 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| || || || ||||| | || || || || | Sbjct 16961508 AATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCCTC 16961449 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| |||| | || | || ||||| || || | || ||||||| Sbjct 16961448 GGACACCATCGAGAATGTTAAGGCCAAGA-TTCAGGACAAGGAGGGAATTCCCCCAGATC 16961390 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||||||||| || |||||||| | |||||| | ||| |||| Sbjct 16961389 AGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACA 16961330 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 16961329 ACATCCAGAAGGAGTCGAC 16961311 >seq17436 Length=11997470 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | || || || || ||||| | || || || | Sbjct 6691937 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCT 6691996 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || | || | | ||||| || || | || ||||| Sbjct 6691997 TCCGATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGA 6692055 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||||||||| || |||||||| | ||||||| | ||||| Sbjct 6692056 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTA 6692115 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || |||||||| |||| || || Sbjct 6692116 CAACATCCAGAAGGAGTCCACTCTACACTTGGT 6692148 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || ||||| | || || || | | Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692286 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||| | ||||||| | |||||||| Sbjct 6692287 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692346 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 6692347 CATCCAGAAAGAGTCCAC 6692364 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| | || || || | | Sbjct 6692624 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692683 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6692684 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692742 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || |||||||| | ||||||| | |||||||| Sbjct 6692743 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6692802 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 6692803 CATCCAGAAAGAGTCCAC 6692820 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || ||||| | || || || | | Sbjct 6692852 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692911 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6692912 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6692970 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||| | ||||||| | |||||||| Sbjct 6692971 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693030 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6693031 CATCCAGAAGGAGTCCAC 6693048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| | || || || | | Sbjct 6693080 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693139 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6693140 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693198 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || |||||||| | ||||||| | |||||||| Sbjct 6693199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693258 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6693259 CATCCAGAAGGAGTCCAC 6693276 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || ||||| | || || || | | Sbjct 6693308 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693367 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6693368 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693426 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || |||||||| | ||||||| | |||||||| Sbjct 6693427 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693486 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6693487 CATCCAGAAGGAGTCCAC 6693504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || ||||| | || || || | | Sbjct 6693536 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693595 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 6693596 GATACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 6693654 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || |||||||| | ||||||| | |||||||| Sbjct 6693655 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAA 6693714 Query 23790 CATACAAAAAGAGTCC 23805 ||| || || |||||| Sbjct 6693715 CATCCAGAAGGAGTCC 6693730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337937756059520