Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq17436 161 2e-34 seq12401 152 1e-31 seq17138 147 5e-30 seq17440 132 1e-25 seq17438 118 3e-21 >seq17436 Length=11997470 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| ||||| |||| |||||||| | | ||| | |||||| Sbjct 6692835 AGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6692776 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 6692775 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692716 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6692715 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692656 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | ||| | ||||| Sbjct 6692655 TTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||||||| | | ||| | |||||| Sbjct 6692607 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCT 6692548 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 6692547 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692488 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6692487 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692428 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 6692427 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| |||||||| | | ||| | |||||| Sbjct 6693291 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693232 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 6693231 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6693172 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6693171 TGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTC 6693112 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | ||| | ||||| Sbjct 6693111 TTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| ||||| |||| |||||||| | | ||| | |||||| Sbjct 6692379 AGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6692320 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || || || ||||| || |||||||| Sbjct 6692319 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692260 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6692259 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692200 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 6692199 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| |||||||| | | ||| | |||||| Sbjct 6693519 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693460 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 6693459 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6693400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6693399 TGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTC 6693340 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 6693339 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| |||||||| | | ||| | |||||| Sbjct 6693063 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCT 6693004 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || || || ||||| || |||||||| Sbjct 6693003 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6692944 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 6692943 TGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTC 6692884 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 6692883 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 >seq12401 Length=3477 Score = 152 bits (168), Expect = 1e-31 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| |||| || ||||| |||||||||||||| ||| | ||||| Sbjct 175 CCAAATTTATAATGTTATTGTTACTGCTCATGCTTTTGTTATGATTTTTTTTATAGTTAT 234 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| ||||||||||| | || |||||||| Sbjct 235 ACCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATACTAGGAGCTCCTGA 294 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||| || || || | | || |||||||||||||||||||| || ||| Sbjct 295 TATAGCATTCCCTCGAATAAATAATATAAGTTTTTGATTACTTCCTCCT 343 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||| ||||| || || || ||||| ||||| |||| Sbjct 748 TTCTGGGTGTCCAAAAAATCAAAATAAGTGTTGGTATAGAATTGGATCCCCTCCTCCTGC 689 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||| ||||||| ||| ||||| Sbjct 688 TGGGTCAAAAAATGAAGTATTTAAATTTCGATCTGTTAA 650 >seq17138 Length=15315 Score = 147 bits (162), Expect = 5e-30 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| |||| || ||||| |||||||||||||| ||| | ||||| Sbjct 2833 CCAAATTTATAATGTTATTGTTACTGCCCATGCTTTTGTTATGATTTTTTTTATAGTTAT 2892 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| ||||||||||| | || |||||||| Sbjct 2893 ACCAATTATAATTGGGGGATTTGGAAATTGATTAGTTCCTTTAATACTAGGAGCTCCTGA 2952 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||| || || || | | || |||||||||||||| ||||| || ||| Sbjct 2953 TATAGCATTCCCTCGAATAAATAATATAAGTTTTTGGTTACTTCCCCCT 3001 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||| ||||| || || || ||||| || || |||| Sbjct 3406 TTCTGGATGCCCAAAAAATCAAAATAAGTGTTGGTATAGAATTGGATCTCCCCCTCCTGC 3347 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||| ||||||| ||| ||||| Sbjct 3346 TGGGTCAAAAAATGAAGTATTTAAATTTCGATCTGTTAA 3308 >seq17440 Length=24565398 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || ||||| || | ||| || |||| ||| || | |||||| Sbjct 435096 AGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCT 435155 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || |||||||| || || || ||||| || || || || ||||||||| Sbjct 435156 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCT 435215 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || ||||| || | ||| || || | ||||| ||| Sbjct 435216 TGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTC 435275 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||| | ||| | |||||| Sbjct 435276 TTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || || || || | || || |||| ||| || | |||||| Sbjct 435324 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 435383 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || |||||||| || || |||||||| || || || || ||||||||| Sbjct 435384 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCT 435443 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || || || || || | ||| || || | ||||| ||| Sbjct 435444 TGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTC 435503 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||| | ||| | |||||| Sbjct 435504 TTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || || || || | || || |||| ||| || | |||||| Sbjct 435780 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 435839 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || |||||||| || || |||||||| || || || || ||||||||| Sbjct 435840 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCT 435899 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || || || || || | ||| || || | ||||| ||| Sbjct 435900 TGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTC 435959 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||| | ||| | |||||| Sbjct 435960 TTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || || |||| |||||| |||| |||||| | ||||| || |||||| Sbjct 434877 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACCATCCTCAAGCTGC 434936 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | || || ||||| || || || || ||||||||||||||||| Sbjct 434937 TTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTG 434996 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || ||||| || | ||| || || | || || ||||| || || Sbjct 434997 GCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAATGGTCTTTCCAGT 435055 >seq17438 Length=17193109 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || || | |||||| Sbjct 16961296 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 16961355 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | || || || || || ||||| || |||||||| Sbjct 16961356 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 16961415 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| |||| ||||| || || ||||| ||| Sbjct 16961416 TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTC 16961475 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | || | ||||||| Sbjct 16961476 TTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192264728903360