Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 168 6e-37
>seq17439
Length=18325388
Score = 168 bits (186), Expect = 6e-37
Identities = 542/831 (65%), Gaps = 20/831 (2%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| |||||| ||| ||| || || ||||| ||||| || || || ||||| |||||
Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTC--ACACTTTAGAGCTACA--AG 4375
|| ||| ||| ||||| ||| ||| || | |||| | |||| ||||| || |
Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATA-TATTTTACCGACACC---GAGCTCCACCAA 9056417
Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435
||| || || || || || || ||||| | | ||| || | || || || ||||| |
Sbjct 9056418 CAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAG 9056477
Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495
| ||||| | |||| || | |||||| || || ||||| || || || | || ||
Sbjct 9056478 ATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGAT 9056537
Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555
|| | || || || | || | || |||| | | ||||||
Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597
Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615
|| ||||||| || || || | | || || ||||| || || || | ||||||||
Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657
Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675
|| || | |||||||||||| || || | |||||| || |||||| ||||||||
Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717
Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT---TTGTCTTTAATCCA 4732
||||| || || || | |||| | ||| || || |||| ||| | ||||||
Sbjct 9056718 GACGGCAGCGAAGGCAA-TAATGCGCTCCCCAA--AGTTGGCAGCCTTGGATGAAATCCA 9056774
Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
| ||||||| || || ||| || ||| ||||| | ||||| || || |
Sbjct 9056775 AGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAG 9056834
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| | | | || ||| | ||||||||||| ||||| | || ||||| || ||
Sbjct 9056835 ATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGA 9056894
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912
|||| ||| || || ||||||||||| || || ||||| | || ||||| | || ||
Sbjct 9056895 GTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCAC 9056954
Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972
||| | | ||| | || || | || ||||| || || || || ||| || || ||
Sbjct 9056955 TTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAA 9057014
Query 4973 CGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGG 5029
||||| ||||| || || || | || | ||| | ||||| | ||||| |
Sbjct 9057015 AGCCAACACATGTGAAATGAAATGACGCTCATTGTCTG--TTAAG-CGTACCCAGTCCGT 9057071
Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080
|| || || | || ||| || || || |||||||| || || ||||| ||
Sbjct 9057072 CATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426958830607520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |