Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq17439 168 6e-37 >seq17439 Length=18325388 Score = 168 bits (186), Expect = 6e-37 Identities = 542/831 (65%), Gaps = 20/831 (2%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || |||||| ||| ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTC--ACACTTTAGAGCTACA--AG 4375 || ||| ||| ||||| ||| ||| || | |||| | |||| ||||| || | Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATA-TATTTTACCGACACC---GAGCTCCACCAA 9056417 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || || || || || ||||| | | ||| || | || || || ||||| | Sbjct 9056418 CAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAG 9056477 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||||| | |||| || | |||||| || || ||||| || || || | || || Sbjct 9056478 ATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGAT 9056537 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 || | || || || | || | || |||| | | |||||| Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 || ||||||| || || || | | || || ||||| || || || | |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 || || | |||||||||||| || || | |||||| || |||||| |||||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT---TTGTCTTTAATCCA 4732 ||||| || || || | |||| | ||| || || |||| ||| | |||||| Sbjct 9056718 GACGGCAGCGAAGGCAA-TAATGCGCTCCCCAA--AGTTGGCAGCCTTGGATGAAATCCA 9056774 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | ||||||| || || ||| || ||| ||||| | ||||| || || | Sbjct 9056775 AGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAG 9056834 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | | | | || ||| | ||||||||||| ||||| | || ||||| || || Sbjct 9056835 ATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGA 9056894 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 |||| ||| || || ||||||||||| || || ||||| | || ||||| | || || Sbjct 9056895 GTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCAC 9056954 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | ||| | || || | || ||||| || || || || ||| || || || Sbjct 9056955 TTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAA 9057014 Query 4973 CGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGG 5029 ||||| ||||| || || || | || | ||| | ||||| | ||||| | Sbjct 9057015 AGCCAACACATGTGAAATGAAATGACGCTCATTGTCTG--TTAAG-CGTACCCAGTCCGT 9057071 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || || || | || ||| || || || |||||||| || || ||||| || Sbjct 9057072 CATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426958830607520