Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq17434 489 2e-133 seq17439 271 1e-67 >seq17434 Length=8399593 Score = 489 bits (542), Expect = 2e-133 Identities = 1221/1844 (66%), Gaps = 14/1844 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || || || ||||| ||||| || || || ||||| |||| ||| ||| Sbjct 1622272 GCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGACCGGCTTTCCACGAGTAAAAA 1622331 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || |||||||||| ||| | || || || | ||| || || | |||||||||| Sbjct 1622332 TGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACATGTATGTTGAACGACTGACTT 1622391 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGA-ATTTC 76981 ||||| ||||| || || | ||| || |||||||| || | || ||| ||| ||||| Sbjct 1622392 TGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATCGTTGT-TTTCACGGATATTTC 1622450 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG--TTTG-TATTTTGAATGGA 77038 ||| | || || | | | | | || | ||| | | || | | ||||| || || Sbjct 1622451 CCACACGGTCTTATACAGATCCCTCACATTTTTTGGTATGGATTCGATGTTTTGTATTGA 1622510 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 || | | | || ||| |||||| |||||||||| |||||| | | ||| ||||| Sbjct 1622511 TCCTCGACTGGCGATTATTTGATTCTTCATATCATCATCCCACAAGTCCAGCTCCGTTAA 1622570 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | | | | | |||| |||| || | || || || || |||| || | || ||||| Sbjct 1622571 ATCACGCAACAAATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTA 1622630 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 || || |||||| || || | |||||||| || |||| |||||||| ||||| || Sbjct 1622631 GATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGC 1622690 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 |||||||| || || || | | | ||| | | |||||| |||| || Sbjct 1622691 GGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGACAGCTT 1622750 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || | ||||| ||||| ||||| | ||| |||| | |||||| |||| || Sbjct 1622751 AAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTAAGAT 1622810 Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 || || ||| | ||| ||| |||||||| |||||||| ||| || | ||| Sbjct 1622811 ACCCTTGCTAACTGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTC 1622870 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 || || ||||||| ||| || |||| || ||||| || || | | ||| | | | Sbjct 1622871 GCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGC 1622930 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 || || || ||| | |||| | | | ||||| || ||||| || ||||| || || Sbjct 1622931 GGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCAC 1622990 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATA 77578 ||||||||||| |||| ||| | |||||| | || || || |||| ||||| || Sbjct 1622991 ACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGTA 1623050 Query 77579 ATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTT 77638 || ||||| || |||||||| | ||| | ||| ||| || || || ||||| Sbjct 1623051 GTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTT 1623110 Query 77639 AAGAAAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATT 77695 || || | || || | |||||||||||||| || || ||||||| ||| Sbjct 1623111 CTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTAAATT 1623170 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || || || | |||| | | ||| | | || || || ||||||||||| || Sbjct 1623171 GCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCA 1623230 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 |||||| ||||||| |||||| || |||||||| |||||||||||||| | || || Sbjct 1623231 TTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACAGCAT 1623290 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | || || || || || | ||||| ||| || || | ||| | | |||||| Sbjct 1623291 GTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAGCTTT 1623350 Query 77876 TATCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCAT 77934 || | | |||| | | ||| |||| | || |||||| || || ||||| || | Sbjct 1623351 AATTACTCGATTCGCTTTGCC-CTCTTTCTCGTATTGAACGTACAGTTTCTCAAAATCGT 1623409 Query 77935 CTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCAT 77994 | ||||||||||| | | || || || | || ||||||||||| ||||| || ||| Sbjct 1623410 CGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCAT 1623469 Query 77995 CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 78054 | | || ||||||||||| |||||||||||||||| ||| ||| || || || | Sbjct 1623470 TGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTG 1623529 Query 78055 TTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAAT 78114 | ||| || || || || || || || || | ||| | ||| || | ||||| |||| Sbjct 1623530 CCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAAT 1623589 Query 78115 GCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATAT 78174 |||| || || | ||| || || | | || ||||| ||| || |||||||| | || Sbjct 1623590 GCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACAT 1623649 Query 78175 ATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTG 78234 | | || ||||| | || | || |||||| | | || || || || ||||| | Sbjct 1623650 AGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCG 1623709 Query 78235 TTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTG 78294 | ||| |||| | | || | || |||||| | || | | ||| || || || | Sbjct 1623710 TGCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAG 1623769 Query 78295 CCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCAT 78354 | || || || | ||||| ||| | | | | | || ||||| || || Sbjct 1623770 CGGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGAATCGG 1623829 Query 78355 CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATA 78414 | |||| | | ||| ||||| |||||||| || || || | || ||| | Sbjct 1623830 AGACCATGGTTAAAAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCGGCAAAAA 1623889 Query 78415 ATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTG 78474 ||| || ||||||||||| || | ||||||| || ||||| || || || | ||| | Sbjct 1623890 GTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCACAGCAG 1623949 Query 78475 ATTCTATGTCCCATTG--ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCT 78532 || || | ||| | ||| || || | || || ||||||| ||| ||||| || | Sbjct 1623950 CATCAATAT--CATCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCTGTGGACG 1624007 Query 78533 TTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 78592 || | | || | |||||| |||| ||| || ||| || | || ||||| ||||| Sbjct 1624008 CTCTGCTATTTTGTGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAAATCCAAA 1624067 Query 78593 ATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 ||| || || |||||| | ||||| || || ||||||||| Sbjct 1624068 ATAATTATAGCCAAAGTCACGATCGTAGATGATCGCAGAATTTA 1624111 >seq17439 Length=18325388 Score = 271 bits (300), Expect = 1e-67 Identities = 560/825 (68%), Gaps = 11/825 (1%) Strand=Plus/Plus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 |||||||| ||||| ||||| |||||||| ||||| || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 47972 || ||| ||||||||| || ||||| ||||| | || | || | || Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 47973 CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 48032 | ||| || ||||| || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 48033 ACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACTATTATC 48089 || || | ||| || || |||||||| || || ||||| ||||||||| || || || Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGATC-TC 9056540 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 ||| | | ||| || || | | || || || | ||||| | | ||||| Sbjct 9056541 AATGATGCG--TTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAAG 9056598 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || ||||| || || ||||| | || | ||||| || || || |||||||||||| Sbjct 9056599 TCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCATT 9056658 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 || ||||| ||||| ||||| || || | || ||| || |||||| |||||||| Sbjct 9056659 AGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTCG 9056718 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TG-TATCCACCGT 48326 ||||| || || || ||| | ||| || | |||| | ||| || ||||| Sbjct 9056719 ACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGAG 9056778 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 | ||||| || ||||| ||||||| ||||||||||| |||||||| |||||| | Sbjct 9056779 AGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATAA 9056838 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 | | || |||| | ||||| || |||| | ||| ||||| || ||||| Sbjct 9056839 TCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGT 9056898 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 | ||| || || || |||||||| || || || || | ||| ||||| ||||| || ||| Sbjct 9056899 ACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCC 9056958 Query 48507 GTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCT 48566 | ||| || ||| ||| |||||| || || || ||||| || || || || || Sbjct 9056959 TGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCC 9057018 Query 48567 AATACATGTTTAATAAAATATTTTTCGTTGGAAG-TCAGTTTATTCCAGTCATTGATATC 48625 || |||||| ||| |||| || ||| | | || || |||||| | || || Sbjct 9057019 AACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGTC 9057077 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || |||| ||| || || || | ||||| |||||||| || || Sbjct 9057078 CTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694517362201600