Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17434 459 4e-124 seq17439 262 6e-65 >seq17434 Length=8399593 Score = 459 bits (508), Expect = 4e-124 Identities = 1227/1865 (66%), Gaps = 14/1865 (1%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| |||| | | || || || || || ||||| ||||| || || || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 || |||| ||| ||||| || ||| |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || || || | ||||||||||||||| ||||| || || | ||| || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 75557 ATGGTCTTTTGAGGA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA- 75614 | || ||| ||| |||||||| | || || | | | | | || | ||| | Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489 Query 75615 -GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATT 75672 |||| | | ||||| || ||||| | | | || ||| |||||| || ||||||| Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549 Query 75673 CCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCC 75732 |||||| | ||| |||||| | | | | |||| |||| || | || || || || Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609 Query 75733 AGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 75792 |||| || | ||| ||||| || || |||||| || || | |||||||| || || Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669 Query 75793 CAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 75852 || |||||||| || || || || ||||| || || || | | | ||| | | ||| Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729 Query 75853 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATC 75912 ||| |||| || || | ||||| ||||| ||||| | |||| | Sbjct 1622730 ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGCC 1622789 Query 75913 CCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGT 75972 ||| | |||||| |||| || || |||||| | ||| ||| ||||| || | Sbjct 1622790 CCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGATAGGTTTCATAGGG 1622849 Query 75973 CCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAA 76032 || ||||||| || | |||||| || || || | || || |||| || ||||| || Sbjct 1622850 TCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAA 1622909 Query 76033 AATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAA 76092 || | | ||| | | | || || || ||| |||||| | | | ||||| || Sbjct 1622910 GATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATCAA 1622969 Query 76093 TGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTC 76152 |||||| || | ||| || || ||||||||||| |||| ||| | |||||| | | Sbjct 1622970 TGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTT 1623029 Query 76153 AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTAC 76212 || || |||| || || || || || || || |||||||| | ||| || ||| Sbjct 1623030 TGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGT 1623089 Query 76213 TTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TCACAAACATATT 76269 ||| || || || ||||| || || | || || |||||||||| || Sbjct 1623090 TTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTT 1623149 Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 | || || ||||||| ||| || ||||| | |||| | | ||| | | || Sbjct 1623150 CAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAAT 1623209 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 || |||||||||||||| || ||||| || || | |||||| || |||||||| ||| Sbjct 1623210 TTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTT 1623269 Query 76390 ACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 ||||||||||| | || | | || || ||||| || | ||||| ||| || || | Sbjct 1623270 GCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGC 1623329 Query 76450 TTTCCAGACGACTCTAGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTG 76508 ||| | | |||||| |||| | |||| | | || |||| | || ||||| Sbjct 1623330 AAACCAAAGTGTTTGAGCTTTAATTACTCGATTCGCTTTGCC-CTCTTTCTCGTATTGAA 1623388 Query 76509 TATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGAC 76568 || | ||||| || || ||||||||||| | | || ||||| | || || | Sbjct 1623389 CGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGC 1623448 Query 76569 ACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATA 76628 |||||| ||||| || ||| | | || ||||||||||| |||||||||||||||| Sbjct 1623449 ACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATA 1623508 Query 76629 GAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTA 76688 ||| ||| || || || | | | | || || || || || || || || | ||| | Sbjct 1623509 AGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCA 1623568 Query 76689 GGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTT 76748 || || | ||||| |||||||| || || | ||| || || | |||||||||| | Sbjct 1623569 TAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCT 1623628 Query 76749 TATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAA 76808 || || |||||||| | ||| | || ||||| | || | || |||||| | | Sbjct 1623629 TACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCA 1623688 Query 76809 TGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAA 76868 || || || || ||||| || ||| |||| | | || ||||||||| | || Sbjct 1623689 GCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAA 1623748 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 || || || || || || ||| ||||| | || || ||| | | | Sbjct 1623749 CGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGA 1623808 Query 76929 AGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGAT 76988 | |||||||| || ||| | |||| | | ||| ||||| |||||||| || Sbjct 1623809 AAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACGACATTTGCGGAC 1623868 Query 76989 GAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTA 77048 || || | || ||| | ||| || |||||||| ||||| | ||||||| || | Sbjct 1623869 GATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCA 1623928 Query 77049 GATTGTATGTTTCAATAACTGCTTCTATATCCCATTG--ATGAATTCCTACAGCGACACG 77106 |||| || || || | | | || || |||| ||| | ||| || || | | ||| || Sbjct 1623929 GATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCCAATCGAGACGCG 1623986 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||| ||| ||||| || || ||| | | || | |||||| |||| ||| || ||| Sbjct 1623987 CATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCAAATACGATCG 1624046 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 || | || ||||| |||||||| || || |||||| | ||||| || || | || Sbjct 1624047 CTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTAGATGATCGCAGA 1624106 Query 77227 ATTTA 77231 ||||| Sbjct 1624107 ATTTA 1624111 >seq17439 Length=18325388 Score = 262 bits (290), Expect = 6e-65 Identities = 558/826 (68%), Gaps = 13/826 (2%) Strand=Plus/Plus Query 46342 TGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 46401 || ||||| || || ||||| |||||||| ||||| || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 46402 ATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 46461 || ||| ||| ||||| | ||||| ||||| | || | || | || Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 46462 CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTG 46521 | ||| || ||||| || ||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 46522 ACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGAT 46581 || || | ||| || || |||||||| || |||||||| ||||||||||| | |||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGA----CGAT 9056537 Query 46582 GTTACTGTTTCCT-CAC---TTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | || | | | ||| | || | |||| || || | ||||| | | ||||| Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 || ||||| || || ||||| | || | ||||| || || || || || ||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 ||| ||||||||||| ||||| || || | || ||| || |||||| |||||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATG-AATCCACCT 46814 || || ||||| || | || | ||| || | ||||| | || ||| |||||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||||| || ||||| ||||||| ||||||||||| |||||||| |||||| | Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 | | || | |||| | ||| || || |||| | ||| ||||| ||||| || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 | || || || || |||||||| || || || || | || || |||||||| || || Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 | ||| || ||| || |||||| || || || ||||| || || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 47055 CAATACATGTTTAATAAAATATTTTTCATCG-GTAGTCAGTTTATTCCAGTCATTGATAT 47113 ||| |||||| ||| |||| |||| | | | || || |||||| | || | Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 | || |||| ||| || || || | ||||||||||| || || || Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712778980300800