Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 105 2e-17
seq17436 105 2e-17
seq17438 95.1 3e-14
seq17434 89.7 1e-12
>seq17440
Length=24565398
Score = 105 bits (116), Expect = 2e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||| || | || ||||| ||||| || || ||||| || |||| || ||
Sbjct 435314 CCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGT 435373
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| | ||| ||||||||||| || | ||| ||||| | | ||||||
Sbjct 435374 GCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCC 435433
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||||| |||||||| || || || |||| | | || ||| || || || ||
Sbjct 435434 CTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAG 435493
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
||| || || || || || | || || ||||||| |||||||
Sbjct 435494 AGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536
Score = 105 bits (116), Expect = 2e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||| || | || ||||| ||||| || || ||||| || |||| || ||
Sbjct 435770 CCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGT 435829
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| | ||| ||||||||||| || | ||| ||||| | | ||||||
Sbjct 435830 GCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCC 435889
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||||| |||||||| || || || |||| | | || ||| || || || ||
Sbjct 435890 CTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAG 435949
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
||| || || || || || | || || ||||||| |||||||
Sbjct 435950 AGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992
Score = 104 bits (114), Expect = 5e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || ||||| |||||||| || || || || |||| || || |
Sbjct 435089 GAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCG 435148
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| | ||| ||||||||||| || | ||||||||| | | |||||| ||
Sbjct 435149 ACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTC 435208
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| ||||| || || || || |||| | |||| ||| || || || |||||
Sbjct 435209 CTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGT 435268
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || || || | || || ||||||| |||||||
Sbjct 435269 GATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/209 (71%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || ||||| ||||| |||| || || | |||||||| |
Sbjct 434645 CAAG-TGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCA 434703
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| ||||||||||| || | |||||| || | | ||||| ||||| || ||||
Sbjct 434704 ACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAA 434763
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| |||||| | || | |||| | || ||||| | ||| || || || |
Sbjct 434764 TTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTC 434823
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| || | || || ||||||| |||||||
Sbjct 434824 CAGTCAATGTTTTAACGAAGATCTGCATT 434852
>seq17436
Length=11997470
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| |||||||| |||||||||||||| | | ||| | |||||||| |
Sbjct 6692374 CAAG-TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692316
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||| ||||| || | |||||| || | | || || ||||| || || |
Sbjct 6692315 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692256
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6692255 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692196
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||| ||||||| ||||||
Sbjct 6692195 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| |||||||| |||||||||||||| | | ||| | |||||||| |
Sbjct 6692830 CAAG-TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692772
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 6692771 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692712
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6692711 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692652
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||| || ||||||| ||||||
Sbjct 6692651 CAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| |
Sbjct 6693514 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693456
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 6693455 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6693396
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6693395 TCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6693336
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||| ||||||| ||||||
Sbjct 6693335 CAGTCAAAGTCTTGACGAAGATCTGCAT 6693308
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || ||||| |||||||| | | ||| | |||||||| |
Sbjct 6692602 CAAG-TGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692544
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 6692543 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692484
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6692483 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692424
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||| ||||||| ||||||
Sbjct 6692423 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| |
Sbjct 6693058 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693000
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||| ||||| || | |||||| || | | || || ||||| || || |
Sbjct 6692999 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692940
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6692939 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692880
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||| ||||||| ||||||
Sbjct 6692879 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692852
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| |
Sbjct 6693286 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693228
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 6693227 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6693168
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6693167 TCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6693108
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||| || ||||||| ||||||
Sbjct 6693107 CAGTCAAAGTTTTGACGAAGATCTGCAT 6693080
Score = 98.7 bits (108), Expect = 2e-15
Identities = 151/214 (71%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| |
Sbjct 6692146 CAAG-TGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692088
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||| ||||| || | |||||| || | | || || ||||| || || |
Sbjct 6692087 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692028
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| ||| || || | || || || ||||
Sbjct 6692027 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6691968
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
| || | |||||| ||||| | |||||| || ||
Sbjct 6691967 CAGTCAAAGTCTTGACGAAAATCTGCATATTTCC 6691934
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970
||||| || |||||||||||||| | | ||| | |||||||| || || ||||||
Sbjct 6693729 GACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCG 6693670
Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030
||||| || | |||||| || | | || || ||||| || || || || || |||
Sbjct 6693669 AAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693610
Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090
|||| | | | || ||| ||| || || | || || || ||||| || | ||||||
Sbjct 6693609 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693550
Query 152091 ACGAAGACCTGCAT 152104
||||||| ||||||
Sbjct 6693549 ACGAAGATCTGCAT 6693536
>seq17438
Length=17193109
Score = 95.1 bits (104), Expect = 3e-14
Identities = 147/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | || | |||||||| |
Sbjct 16961301 CAAG-TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCA 16961359
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||| ||||| | | |||||| || | | ||||| ||||| || ||||
Sbjct 16961360 GCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAA 16961419
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | |||| || ||| || || | || || || || |
Sbjct 16961420 TCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTTCC 16961479
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| ||||| |||||||| |||| ||||||
Sbjct 16961480 CGGTGAGTGTCTTCACAAAGATTTGCATT 16961508
>seq17434
Length=8399593
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
|| |||||||| || ||||||||||| | | ||| | |||||||| | || ||
Sbjct 1558137 GTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 1558078
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
|| ||||| | | |||||| || | | |||||||| || || || || || ||||
Sbjct 1558077 GCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 1558018
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
||| | || | | | || || || || |||||||| || || || |||||||| ||
Sbjct 1558017 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1557958
Query 152088 TTCACGAAGACCTGCAT 152104
|| ||||||| |||||
Sbjct 1557957 TTAACGAAGATTTGCAT 1557941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153562978742240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |