Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq17440 105 2e-17 seq17436 105 2e-17 seq17438 95.1 3e-14 seq17434 89.7 1e-12 >seq17440 Length=24565398 Score = 105 bits (116), Expect = 2e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || | || ||||| ||||| || || ||||| || |||| || || Sbjct 435314 CCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGT 435373 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| ||||||||||| || | ||| ||||| | | |||||| Sbjct 435374 GCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCC 435433 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| |||||||| || || || |||| | | || ||| || || || || Sbjct 435434 CTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAG 435493 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || || || | || || ||||||| ||||||| Sbjct 435494 AGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 105 bits (116), Expect = 2e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || | || ||||| ||||| || || ||||| || |||| || || Sbjct 435770 CCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGT 435829 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| ||||||||||| || | ||| ||||| | | |||||| Sbjct 435830 GCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCC 435889 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| |||||||| || || || |||| | | || ||| || || || || Sbjct 435890 CTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAG 435949 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || || || | || || ||||||| ||||||| Sbjct 435950 AGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 Score = 104 bits (114), Expect = 5e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| |||||||| || || || || |||| || || | Sbjct 435089 GAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCG 435148 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| ||||||||||| || | ||||||||| | | |||||| || Sbjct 435149 ACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTC 435208 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || || |||| | |||| ||| || || || ||||| Sbjct 435209 CTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGT 435268 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || | || || ||||||| ||||||| Sbjct 435269 GATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||| ||||| |||| || || | |||||||| | Sbjct 434645 CAAG-TGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCA 434703 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| || | |||||| || | | ||||| ||||| || |||| Sbjct 434704 ACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAA 434763 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | |||| | || ||||| | ||| || || || | Sbjct 434764 TTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTC 434823 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | || || ||||||| ||||||| Sbjct 434824 CAGTCAATGTTTTAACGAAGATCTGCATT 434852 >seq17436 Length=11997470 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| |||||||| |||||||||||||| | | ||| | |||||||| | Sbjct 6692374 CAAG-TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692316 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | || || ||||| || || | Sbjct 6692315 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692256 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6692255 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692196 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 6692195 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| |||||||| |||||||||||||| | | ||| | |||||||| | Sbjct 6692830 CAAG-TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692772 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || || | Sbjct 6692771 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692712 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6692711 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692652 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||| || ||||||| |||||| Sbjct 6692651 CAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| | Sbjct 6693514 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693456 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || || | Sbjct 6693455 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6693396 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6693395 TCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6693336 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 6693335 CAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||| |||||||| | | ||| | |||||||| | Sbjct 6692602 CAAG-TGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692544 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || || | Sbjct 6692543 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692484 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6692483 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692424 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 6692423 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| | Sbjct 6693058 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693000 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | || || ||||| || || | Sbjct 6692999 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692940 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6692939 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6692880 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 6692879 CAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| | Sbjct 6693286 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6693228 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || || | Sbjct 6693227 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6693168 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6693167 TCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6693108 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||| || ||||||| |||||| Sbjct 6693107 CAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || |||||||||||||| | | ||| | |||||||| | Sbjct 6692146 CAAG-TGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCA 6692088 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | || || ||||| || || | Sbjct 6692087 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6692028 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||| || || | || || || |||| Sbjct 6692027 TCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 6691968 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | || | |||||| ||||| | |||||| || || Sbjct 6691967 CAGTCAAAGTCTTGACGAAAATCTGCATATTTCC 6691934 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970 ||||| || |||||||||||||| | | ||| | |||||||| || || |||||| Sbjct 6693729 GACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCG 6693670 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| || | |||||| || | | || || ||||| || || || || || ||| Sbjct 6693669 AAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693610 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 |||| | | | || ||| ||| || || | || || || ||||| || | |||||| Sbjct 6693609 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693550 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 6693549 ACGAAGATCTGCAT 6693536 >seq17438 Length=17193109 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | |||||||| | Sbjct 16961301 CAAG-TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCA 16961359 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| | | |||||| || | | ||||| ||||| || |||| Sbjct 16961360 GCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAA 16961419 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| || ||| || || | || || || || | Sbjct 16961420 TCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTTCC 16961479 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| |||||||| |||| |||||| Sbjct 16961480 CGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 >seq17434 Length=8399593 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| || ||||||||||| | | ||| | |||||||| | || || Sbjct 1558137 GTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 1558078 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | |||||| || | | |||||||| || || || || || |||| Sbjct 1558077 GCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 1558018 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | || || || || |||||||| || || || |||||||| || Sbjct 1558017 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1557958 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| ||||| Sbjct 1557957 TTAACGAAGATTTGCAT 1557941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153562978742240