Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq17438 161 7e-35 seq17440 145 5e-30 seq17436 143 2e-29 seq17434 118 8e-22 >seq17438 Length=17193109 Score = 161 bits (178), Expect = 7e-35 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| ||||| |||||| ||||||||||| |||| || ||| | || || Sbjct 16961298 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 16961357 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||||||||||||||||||||||| || | || ||||| ||| Sbjct 16961358 CAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 16961417 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | |||||||| | || |||||||||| || || |||| Sbjct 16961418 AATCTT-GGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCT 16961476 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| ||||||||||| Sbjct 16961477 TCCCGGTGAGTGTCTTCACAAAGATTTGCAT 16961507 >seq17440 Length=24565398 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || || || | | |||| ||||| ||| |||||| ||||| ||||| || Sbjct 434849 CATTCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTC 434908 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || |||||||| || |||||||||||||||||||| |||| Sbjct 434909 GGACAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGG 434968 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| || | || |||| | || ||||||| | || Sbjct 434969 GGGGATTCCCTCCTTGTCTTGGATCTT-GGCCTTAACGTTCTCAATTGTGTCGGAAGGTT 435027 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||| |||||||| |||||||||||||| ||||| ||||| Sbjct 435028 CAACCTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 435079 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || || | ||| | || |||| ||| || || |||||| ||||| ||||| |||| | Sbjct 434625 CCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGAC 434684 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || || || | || |||| ||| || ||||| ||||| | |||||||||||||| ||| Sbjct 434685 AAGGTG-CGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| || || ||| | || | || |||||| | |||||| Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || |||||||| || | || || |||||||| ||||| Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| ||| || || |||||| || ||||| || || Sbjct 435533 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTC 435592 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || || |||||||| || ||||||||||| ||||| ||||||| Sbjct 435593 GGACAAGGTA-CGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTG 435651 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| || || ||| | || | || |||||| || | Sbjct 435652 GAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCT 435711 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 435712 CCACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 435763 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| ||| || || |||||| || ||||| || || Sbjct 435989 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTC 436048 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || || |||||||| || ||||||||||| ||||| ||||||| Sbjct 436049 GGACAAGGTA-CGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTG 436107 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| || || ||| | || | || |||||| || | Sbjct 436108 GAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCT 436167 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 436168 CCACTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 436219 >seq17436 Length=11997470 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| |||||| |||||||||||||| Sbjct 6693082 CATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 6693023 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| |||||||||||||| Sbjct 6693022 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 6692963 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 6692962 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTC 6692903 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 6692902 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692851 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| ||| || |||||||||||||| Sbjct 6692398 CATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATC 6692339 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| |||||||||||||| Sbjct 6692338 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 6692279 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 6692278 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTC 6692219 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 6692218 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692167 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| |||||| |||||||||||||| Sbjct 6692170 CATGCCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATC 6692111 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| |||||||||||||| Sbjct 6692110 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 6692051 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 6692050 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTC 6691991 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 6691990 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| |||||| ||||| |||||||| Sbjct 6692626 CATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATC 6692567 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||||| |||||||||||||| Sbjct 6692566 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 6692507 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 6692506 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTC 6692447 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 6692446 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692395 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| |||||| |||||||||||||| Sbjct 6693538 CATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 6693479 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||||| |||||||||||||| Sbjct 6693478 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 6693419 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| || | | || Sbjct 6693418 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTC 6693359 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 6693358 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6693307 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| ||| || |||||||||||||| Sbjct 6692854 CATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATC 6692795 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||||| |||||||||||||| Sbjct 6692794 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 6692735 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 6692734 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTC 6692675 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | || || |||||||| |||||| Sbjct 6692674 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6692623 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || ||| |||||| |||||||||||||| Sbjct 6693310 CATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 6693251 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||||| |||||||||||||| Sbjct 6693250 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 6693191 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| || | | || Sbjct 6693190 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTC 6693131 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || ||||| || || | || || |||||||| |||||| Sbjct 6693130 CACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6693079 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| |||||||||||||| | || ||| | || ||||||||||| ||||| || Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||||||||||| || | || ||||| ||| ||||| ||||| | Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | | |||||||||| || || ||||| || || | ||||| || Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548 Query 44326 GAAGATTTGCATG 44338 |||||| |||||| Sbjct 6693547 GAAGATCTGCATG 6693535 >seq17434 Length=8399593 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || ||| || || ||||||||||| | || ||| | || || Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || |||||||| |||||||||||||||| ||| | ||||| || ||| Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || | ||||| || | | ||| ||||| | || || ||||| Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||||||||| Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359913884040480