Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17434 154 4e-32 seq17438 150 4e-31 seq17436 141 2e-28 seq17440 136 1e-26 >seq17434 Length=8399593 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 1557944 CAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 1558003 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 1558004 ACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 1558063 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| | |||||| | ||||| ||| | Sbjct 1558064 CGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAACATT 1558123 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| |||||| |||| |||| Sbjct 1558124 CAGAAAGAGTCAACATTGCA-CTTG 1558147 >seq17438 Length=17193109 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||| | |||||||| ||| ||| Sbjct 16961504 CAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCCTCGGAC 16961445 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || ||||| || || || ||||| Sbjct 16961444 ACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 16961385 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| ||||||||| | || || |||| || ||| || Sbjct 16961384 CGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATC 16961325 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 16961324 CAGAAGGAGTCGACGCTGCA-CTTG 16961301 >seq17436 Length=11997470 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || || || || |||||| | |||||||| || || Sbjct 6692627 CAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 6692686 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 6692687 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6692746 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| || Sbjct 6692747 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6692806 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 6692807 CAGAAAGAGTCCACTCTCCA-CTTG 6692830 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || || || || |||||| | |||||||| || || Sbjct 6693083 CAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693142 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 6693143 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693202 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| || Sbjct 6693203 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693262 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 6693263 CAGAAGGAGTCCACTCTCCA-CTTG 6693286 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||| | |||||||| || || Sbjct 6693311 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 6693371 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693430 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| || Sbjct 6693431 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693490 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 6693491 CAGAAGGAGTCCACTCTCCA-CTTG 6693514 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||| | |||||||| || || Sbjct 6693539 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693598 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 6693599 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693658 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| || Sbjct 6693659 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693718 Query 178104 CAAAAAGAATC 178114 || || || || Sbjct 6693719 CAGAAGGAGTC 6693729 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||| | |||||||| || || Sbjct 6692399 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 6692458 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 6692459 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6692518 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | |||||| | ||||| || || Sbjct 6692519 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAATATC 6692578 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 6692579 CAGAAGGAGTCCACTCTCCA-CTTG 6692602 >seq17440 Length=24565398 Score = 136 bits (150), Expect = 1e-26 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || || || || ||||| || ||||| ||| || ||| Sbjct 435304 CAGATCTTCGTTAAAACATTGACTGGGAAGACCATCACTCTGGAGGTTGAACCTTCCGAC 435245 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||| || ||||| || |||||||| || |||||||| Sbjct 435244 ACAATTGAGAACGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAGCAG 435185 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||||||||||||| | |||||||| | || |||| |||| ||||| | Sbjct 435184 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAATAT 435126 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || || || || |||| || Sbjct 435125 TCAGAAAGAGTCGACTCTCCA-CTTGGTT 435098 Score = 136 bits (150), Expect = 1e-26 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || ||||| || ||||| || ||||| ||| || || Sbjct 435532 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCCGAT 435473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || |||||||| ||||| || |||||||| || ||||| || Sbjct 435472 ACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAACAG 435413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||||||||||||| | |||||||| | || |||| |||| |||||| | Sbjct 435412 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAACAT 435354 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 435353 TCAGAAGGAGTCGACTCTCCA-CTTGGTT 435326 Score = 136 bits (150), Expect = 1e-26 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || ||||| || ||||| || ||||| ||| || || Sbjct 435988 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCCGAT 435929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || |||||||| ||||| || |||||||| || ||||| || Sbjct 435928 ACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAACAG 435869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||||||||||||| | |||||||| | || |||| |||| |||||| | Sbjct 435868 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAACAT 435810 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 435809 TCAGAAGGAGTCGACTCTCCA-CTTGGTT 435782 Score = 120 bits (132), Expect = 7e-22 Identities = 157/212 (74%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| ||||| | || ||||| || ||||| | || |||||| ||| Sbjct 434848 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAGC--- 434792 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || || ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct 434791 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAG 434732 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || || || |||||||||||||||||| | |||||||| | || |||| |||| || || Sbjct 434731 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTACAA 434673 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| || || || || || || |||| || Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCA-CTTGGTT 434642 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || || ||||| | || ||||| || ||| Sbjct 435760 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGA--GCCCAGCG 435703 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || ||||| || ||||||||||| || ||||| ||||| || || | Sbjct 435702 ACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAAC 435643 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | ||| | ||||| || ||||| ||||| || ||||| | || |||| |||| |||||| Sbjct 435642 AGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCCGACTATAAC 435584 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || || || || || || | ||| | | |||||| Sbjct 435583 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGA 435542 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || || ||||| | || ||||| || ||| Sbjct 436216 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGA--GCCCAGCG 436159 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || ||||| || ||||||||||| || ||||| ||||| || || | Sbjct 436158 ACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAAC 436099 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | ||| | ||||| || ||||| ||||| || ||||| | || |||| |||| |||||| Sbjct 436098 AGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCCGACTATAAC 436040 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || || || || || || | ||| | | |||||| Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGA 435998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203462226263360