Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 154 4e-32
seq17438 150 4e-31
seq17436 141 2e-28
seq17440 136 1e-26
>seq17434
Length=8399593
Score = 154 bits (170), Expect = 4e-32
Identities = 158/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| ||||| || || || ||||| || ||||| ||| || ||
Sbjct 1557944 CAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 1558003
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || |||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 1558004 ACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 1558063
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || || || | |||||||| | |||||| | ||||| ||| |
Sbjct 1558064 CGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAACATT 1558123
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||| |||||| |||| ||||
Sbjct 1558124 CAGAAAGAGTCAACATTGCA-CTTG 1558147
>seq17438
Length=17193109
Score = 150 bits (166), Expect = 4e-31
Identities = 157/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||| || ||||| || || || |||||| | |||||||| ||| |||
Sbjct 16961504 CAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCCTCGGAC 16961445
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || |||||||||||||| || ||||| || || || |||||
Sbjct 16961444 ACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 16961385
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| || ||||| ||||||||| | || || |||| || ||| ||
Sbjct 16961384 CGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATC 16961325
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 16961324 CAGAAGGAGTCGACGCTGCA-CTTG 16961301
>seq17436
Length=11997470
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| |||||| | || || || || |||||| | |||||||| || ||
Sbjct 6692627 CAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 6692686
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 6692687 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6692746
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| ||
Sbjct 6692747 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6692806
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||| || || || || ||||
Sbjct 6692807 CAGAAAGAGTCCACTCTCCA-CTTG 6692830
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| |||||| | || || || || |||||| | |||||||| || ||
Sbjct 6693083 CAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693142
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 6693143 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693202
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| ||
Sbjct 6693203 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693262
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 6693263 CAGAAGGAGTCCACTCTCCA-CTTG 6693286
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || || || |||||| | |||||||| || ||
Sbjct 6693311 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693370
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 6693371 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693430
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| ||
Sbjct 6693431 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693490
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 6693491 CAGAAGGAGTCCACTCTCCA-CTTG 6693514
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || || || |||||| | |||||||| || ||
Sbjct 6693539 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGAT 6693598
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 6693599 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6693658
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| ||||||||| | |||||| | ||||| ||| ||
Sbjct 6693659 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAACATC 6693718
Query 178104 CAAAAAGAATC 178114
|| || || ||
Sbjct 6693719 CAGAAGGAGTC 6693729
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || || || |||||| | |||||||| || ||
Sbjct 6692399 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 6692458
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 6692459 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 6692518
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| ||||||||| | |||||| | ||||| || ||
Sbjct 6692519 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAATATC 6692578
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 6692579 CAGAAGGAGTCCACTCTCCA-CTTG 6692602
>seq17440
Length=24565398
Score = 136 bits (150), Expect = 1e-26
Identities = 158/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| | || || || || ||||| || ||||| ||| || |||
Sbjct 435304 CAGATCTTCGTTAAAACATTGACTGGGAAGACCATCACTCTGGAGGTTGAACCTTCCGAC 435245
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || ||||| || ||||| || |||||||| || ||||||||
Sbjct 435244 ACAATTGAGAACGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAGCAG 435185
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || |||||||||||||||||| | |||||||| | || |||| |||| ||||| |
Sbjct 435184 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAATAT 435126
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|| ||||| || || || || |||| ||
Sbjct 435125 TCAGAAAGAGTCGACTCTCCA-CTTGGTT 435098
Score = 136 bits (150), Expect = 1e-26
Identities = 158/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| | || ||||| || ||||| || ||||| ||| || ||
Sbjct 435532 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCCGAT 435473
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || |||||||| ||||| || |||||||| || ||||| ||
Sbjct 435472 ACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAACAG 435413
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || |||||||||||||||||| | |||||||| | || |||| |||| |||||| |
Sbjct 435412 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAACAT 435354
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 435353 TCAGAAGGAGTCGACTCTCCA-CTTGGTT 435326
Score = 136 bits (150), Expect = 1e-26
Identities = 158/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| | || ||||| || ||||| || ||||| ||| || ||
Sbjct 435988 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTCCGAT 435929
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || |||||||| ||||| || |||||||| || ||||| ||
Sbjct 435928 ACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCAACAG 435869
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || |||||||||||||||||| | |||||||| | || |||| |||| |||||| |
Sbjct 435868 CGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAACAT 435810
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 435809 TCAGAAGGAGTCGACTCTCCA-CTTGGTT 435782
Score = 120 bits (132), Expect = 7e-22
Identities = 157/212 (74%), Gaps = 9/212 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| ||||| | || ||||| || ||||| | || |||||| |||
Sbjct 434848 CAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAGC--- 434792
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| || || || ||||| || ||||||||||| || ||||| ||||| || |||
Sbjct 434791 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAG 434732
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099
|| || || |||||||||||||||||| | |||||||| | || |||| |||| || ||
Sbjct 434731 CAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTACAA 434673
Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
|||| || || || || || || |||| ||
Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCA-CTTGGTT 434642
Score = 95.1 bits (104), Expect = 3e-14
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || | || || || || ||||| | || ||||| || |||
Sbjct 435760 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGA--GCCCAGCG 435703
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || || || ||||| || ||||||||||| || ||||| ||||| || || |
Sbjct 435702 ACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAAC 435643
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| ||| | ||||| || ||||| ||||| || ||||| | || |||| |||| ||||||
Sbjct 435642 AGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCCGACTATAAC 435584
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| || || || || || || || | ||| | | ||||||
Sbjct 435583 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGA 435542
Score = 95.1 bits (104), Expect = 3e-14
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || | || || || || ||||| | || ||||| || |||
Sbjct 436216 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGA--GCCCAGCG 436159
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || || || ||||| || ||||||||||| || ||||| ||||| || || |
Sbjct 436158 ACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAAC 436099
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| ||| | ||||| || ||||| ||||| || ||||| | || |||| |||| ||||||
Sbjct 436098 AGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTAC-CTTGTCCGACTATAAC 436040
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| || || || || || || || | ||| | | ||||||
Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGA 435998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203462226263360
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