Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq17438 136 4e-27 seq17436 134 1e-26 seq17440 123 2e-23 >seq17438 Length=17193109 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 16961280 GCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 16961339 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || |||| ||||| || || | ||| Sbjct 16961340 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGG 16961399 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || || | ||| | | ||||| | ||||| Sbjct 16961400 AATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCA 16961458 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || || ||||| Sbjct 16961459 CCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCAT 16961507 >seq17436 Length=11997470 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||||||||| || || || || || Sbjct 6692623 GCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGA 6692564 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 6692563 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 6692504 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || ||| | |||||| Sbjct 6692503 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6692444 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| ||||| ||||||||| Sbjct 6692443 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692395 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||||||||| ||||| || || || Sbjct 6692167 GCCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 6692108 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||||||||| || ||||| ||||| || || | ||| Sbjct 6692107 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692048 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || ||| | |||||| Sbjct 6692047 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6691988 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || |||| ||||| |||||||||||||| || Sbjct 6691987 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 6691937 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||| ||||| ||||| || || || Sbjct 6692395 GCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 6692336 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||||||||| || ||||| ||||| || || | ||| Sbjct 6692335 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692276 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || ||| | |||||| Sbjct 6692275 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6692216 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| ||||| ||||||||| Sbjct 6692215 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692167 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||| ||||| ||||| || || || Sbjct 6692851 GCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 6692792 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 6692791 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 6692732 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || ||| | |||||| Sbjct 6692731 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6692672 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| || || ||||| ||||||||| Sbjct 6692671 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6692623 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||||||||| ||||| || || || Sbjct 6693079 GCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 6693020 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||||||||| || ||||| ||||| || || | ||| Sbjct 6693019 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692960 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || ||| | |||||| Sbjct 6692959 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6692900 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| ||||| ||||||||| Sbjct 6692899 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692851 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||||||||| ||||| || || || Sbjct 6693535 GCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 6693476 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 6693475 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 6693416 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || || | |||||| Sbjct 6693415 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCAC 6693356 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| ||||| ||||||||| Sbjct 6693355 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6693307 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| ||||||||| ||||| || || || Sbjct 6693307 GCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 6693248 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 6693247 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 6693188 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | || || | |||||| Sbjct 6693187 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCAC 6693128 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| || || ||||| ||||||||| Sbjct 6693127 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6693079 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || || || || ||||| | || || ||||||||||||||||| Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| ||||| || || | ||||| || |||||||||| ||| || ||||| Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || || | ||||||||||| || || || || || |||| ||||| || Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548 Query 41851 GAAAATCTGCATG 41863 ||| ||||||||| Sbjct 6693547 GAAGATCTGCATG 6693535 >seq17440 Length=24565398 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || || |||||||||||||||||||||||| | ||| || Sbjct 436002 AGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTACGA 436061 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| |||||||| || | |||| | |||| Sbjct 436062 CCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGAATTCCCTCC 436121 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| || | || | | ||||||||| | |||||| || | || Sbjct 436122 TTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACTTCTAAAGT 436180 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || |||| |||||||| || |||||||| || Sbjct 436181 GATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || || |||||||||||||||||||||||| | ||| || Sbjct 435546 AGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTACGA 435605 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| |||||||| || | |||| | |||| Sbjct 435606 CCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGAATTCCCTCC 435665 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| || | || | | ||||||||| | |||||| || | || Sbjct 435666 TTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCACTTCTAAAGT 435724 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| |||||||| || |||||||| Sbjct 435725 GATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 435763 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || || |||||||||||||||||||||||| | |||||| Sbjct 435318 AGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGA 435377 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| || |||||||| || || ||||||||||| | ||| | | |||| Sbjct 435378 CCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCC 435437 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | || || | |||| | | ||| ||| | || ||||||| || Sbjct 435438 TTGT-CTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGT 435496 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| || || ||||| |||||||| Sbjct 435497 GATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 435535 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || || |||||||||||||||||||||||| | |||||| Sbjct 435774 AGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGA 435833 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| || |||||||| || || ||||||||||| | ||| | | |||| Sbjct 435834 CCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCC 435893 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | || || | |||| | | ||| ||| | || ||||||| || Sbjct 435894 TTGT-CTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGT 435952 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| || || ||||| |||||||| Sbjct 435953 GATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 435991 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| |||||||| ||||||||||| Sbjct 435081 CCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGAC 435140 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | ||| || |||||||| || || ||||| ||||| | ||| Sbjct 435141 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 435200 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || || | |||| | | |||||| | || || Sbjct 435201 ATTCCCTCCTTGT-CTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAAC 435259 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 435260 CTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462203217728000