Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 122 9e-23
seq4764 102 8e-17
>seq4678
Length=1229792
Score = 122 bits (134), Expect = 9e-23
Identities = 511/799 (64%), Gaps = 16/799 (2%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| || || ||||| || ||||| || || || || |||||||||| | || |||||
Sbjct 1146138 TTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAACGGATTC 1146197
Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
| | || | || ||| | ||||| ||| | | | | ||| || ||||| |
Sbjct 1146198 TTGGTGTTGTAGATCTTTCCCACG--CCCAGCTCGACCAGCAGACGATCGGCCACAAACT 1146255
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871
| || || || |||| | || |||||||| || || ||| ||||| || || || |
Sbjct 1146256 CAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGGCATCGG 1146315
Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAA---CTCGTTCC 16927
| | || ||||| || | || || || || || | | | |||| ||
Sbjct 1146316 TGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATGATGCGCTCGCGCC 1146375
Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987
|||| || || | ||||| | |||||||| || || || || || | |||
Sbjct 1146376 TCGGTCGCTGCACC----AGATGCTGGAACATCAGCACCGCAAAGTCACAGTGCAGACCC 1146431
Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047
|| || | | ||| || || || || || ||||| || |||||| || || |||||
Sbjct 1146432 TCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGCGCTTCTTC 1146491
Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107
| ||| || || | ||| || || ||||| || |||||||||| ||||||||
Sbjct 1146492 AGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGGCAAACGCA 1146551
Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGG 17165
|| | || || | | | || | ||| | | || ||||| | | |||| || |
Sbjct 1146552 ATGATGCGCTCCCCAAAGTTGGCCGACTTGG--AAGAGATCCAGGACAGGGCCCAGTCAG 1146609
Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTA 17225
| || |||| | ||| || || ||||| || || | | || | |||
Sbjct 1146610 CCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATTCCCGCTGGTGTG 1146669
Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285
|||| || || || ||||| || | |||||||| || || || | |||||||||||
Sbjct 1146670 GGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCACGTTCTCCATGG 1146729
Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345
| ||||| || || |||||||| ||||| || | || || || ||| | || || |
Sbjct 1146730 CGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCCTGGCTAAAGCGCT 1146789
Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405
|| | ||||| ||||| || || || ||| ||||| || || |||| | ||| |
Sbjct 1146790 CCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCAGCACATGGGAGA 1146849
Query 17406 TGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCA 17465
|||| | |||||| |||| ||||||| | | ||| ||||| | ||||
Sbjct 1146850 TGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCCTTGGACAAGTCCA 1146909
Query 17466 CTTCTTCGGGGGTCCAAAA 17484
| ||||| |||||| ||
Sbjct 1146910 CCTCTTCCACGGTCCAGAA 1146928
>seq4764
Length=1750656
Score = 102 bits (112), Expect = 8e-17
Identities = 177/255 (69%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
||||| || || ||||| ||||| | || || |||||||| | | ||||||| ||
Sbjct 341837 TTCATGTACCGAATCTTACCGAAGATGGCCCGCTCCTTCCAGCCCATATCGTGGACGCCG 341778
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902
| | || ||| | ||| ||||| || ||||||||||| || || | ||| ||
Sbjct 341777 CCGATGGACCACATGCAACCCACATAGCCGTTGGGATCGCGCCCGTCCAGGCTGTACTTG 341718
Query 119903 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961
||||| | ||| | || | | ||| || || || |||||| || || ||
Sbjct 341717 TCGTTCAGCAGGATGGCGTACTCG-AGCGCCTGCTCCGGCGTGGGGCTCCACTCGAGGAT 341659
Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021
|| || ||||||||||| || ||| | ||||||||||| || || ||||||| || ||
Sbjct 341658 CTTCTTGGCCCAGTACATGCGCAAGAAACCATGCATTTTGCCCTCGCGAACCAGCTGCAG 341599
Query 120022 TTGTGCGGCGTTCCA 120036
||| || ||||||||
Sbjct 341598 TTGCGCCGCGTTCCA 341584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517512341225880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |