Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4678 122 9e-23 seq4764 102 8e-17 >seq4678 Length=1229792 Score = 122 bits (134), Expect = 9e-23 Identities = 511/799 (64%), Gaps = 16/799 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || ||||| || ||||| || || || || |||||||||| | || ||||| Sbjct 1146138 TTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAACGGATTC 1146197 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | || ||| | ||||| ||| | | | | ||| || ||||| | Sbjct 1146198 TTGGTGTTGTAGATCTTTCCCACG--CCCAGCTCGACCAGCAGACGATCGGCCACAAACT 1146255 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || || |||| | || |||||||| || || ||| ||||| || || || | Sbjct 1146256 CAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGGCATCGG 1146315 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAA---CTCGTTCC 16927 | | || ||||| || | || || || || || | | | |||| || Sbjct 1146316 TGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATGATGCGCTCGCGCC 1146375 Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 |||| || || | ||||| | |||||||| || || || || || | ||| Sbjct 1146376 TCGGTCGCTGCACC----AGATGCTGGAACATCAGCACCGCAAAGTCACAGTGCAGACCC 1146431 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || || | | ||| || || || || || ||||| || |||||| || || ||||| Sbjct 1146432 TCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGCGCTTCTTC 1146491 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | ||| || || | ||| || || ||||| || |||||||||| |||||||| Sbjct 1146492 AGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGGCAAACGCA 1146551 Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGG 17165 || | || || | | | || | ||| | | || ||||| | | |||| || | Sbjct 1146552 ATGATGCGCTCCCCAAAGTTGGCCGACTTGG--AAGAGATCCAGGACAGGGCCCAGTCAG 1146609 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTA 17225 | || |||| | ||| || || ||||| || || | | || | ||| Sbjct 1146610 CCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATTCCCGCTGGTGTG 1146669 Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| || || || ||||| || | |||||||| || || || | ||||||||||| Sbjct 1146670 GGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCACGTTCTCCATGG 1146729 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 | ||||| || || |||||||| ||||| || | || || || ||| | || || | Sbjct 1146730 CGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCCTGGCTAAAGCGCT 1146789 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 || | ||||| ||||| || || || ||| ||||| || || |||| | ||| | Sbjct 1146790 CCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCAGCACATGGGAGA 1146849 Query 17406 TGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCA 17465 |||| | |||||| |||| ||||||| | | ||| ||||| | |||| Sbjct 1146850 TGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCCTTGGACAAGTCCA 1146909 Query 17466 CTTCTTCGGGGGTCCAAAA 17484 | ||||| |||||| || Sbjct 1146910 CCTCTTCCACGGTCCAGAA 1146928 >seq4764 Length=1750656 Score = 102 bits (112), Expect = 8e-17 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || ||||| ||||| | || || |||||||| | | ||||||| || Sbjct 341837 TTCATGTACCGAATCTTACCGAAGATGGCCCGCTCCTTCCAGCCCATATCGTGGACGCCG 341778 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | || ||| | ||| ||||| || ||||||||||| || || | ||| || Sbjct 341777 CCGATGGACCACATGCAACCCACATAGCCGTTGGGATCGCGCCCGTCCAGGCTGTACTTG 341718 Query 119903 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 ||||| | ||| | || | | ||| || || || |||||| || || || Sbjct 341717 TCGTTCAGCAGGATGGCGTACTCG-AGCGCCTGCTCCGGCGTGGGGCTCCACTCGAGGAT 341659 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 || || ||||||||||| || ||| | ||||||||||| || || ||||||| || || Sbjct 341658 CTTCTTGGCCCAGTACATGCGCAAGAAACCATGCATTTTGCCCTCGCGAACCAGCTGCAG 341599 Query 120022 TTGTGCGGCGTTCCA 120036 ||| || |||||||| Sbjct 341598 TTGCGCCGCGTTCCA 341584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517512341225880