Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4764 93.3 4e-14 >seq4764 Length=1750656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 177/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || ||||| || || | || ||||||||||| | | ||||||| || Sbjct 341837 TTCATGTACCGAATCTTACCGAAGATGGCCCGCTCCTTCCAGCCCATATCGTGGACGCCG 341778 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | | ||| | || ||||| || ||||||||||| ||||| | |||||| Sbjct 341777 CCGATGGACCACATGCAACCCACATAGCCGTTGGGATCGCGCCCGTCCAGGCTGTACTTG 341718 Query 119056 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114 ||||| | ||| | || | | ||| ||||| || ||||| || || || Sbjct 341717 TCGTTCAGCAGGATGGCGTACTCG-AGCGCCTGCTCCGGCGTGGGGCTCCACTCGAGGAT 341659 Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAG 119174 || || ||||||||||| || || | || |||||||| |||||| || || ||| || Sbjct 341658 CTTCTTGGCCCAGTACATGCGCAAGAAACCATGCATTTTGCCCTCGCGAACCAGCTGCAG 341599 Query 119175 TTGTGCGGTGTTCCATAG 119192 ||| || | |||||| || Sbjct 341598 TTGCGCCGCGTTCCACAG 341581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511381535232120