Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 82.4 6e-11
>seq5094
Length=366253
Score = 82.4 bits (90), Expect = 6e-11
Identities = 203/306 (66%), Gaps = 4/306 (1%)
Strand=Plus/Plus
Query 18889 AAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTT 18948
||| ||| || || || ||||| | || ||||| ||||||||||| || | |
Sbjct 188362 AAAATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAAGTGCCT 188421
Query 18949 GGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATG--TCAGTT 19006
|||||||| | || || |||| ||| ||||| ||| || || ||| ||| ||
Sbjct 188422 GGAATCCAGAAGACATTGGAAGTATGGCACTCCCTCCGTGT--CATGTAATGTTTCAATT 188479
Query 19007 TTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCT 19066
||||||| |||| || | ||||| | || ||| | || || || |||
Sbjct 188480 TTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCT 188539
Query 19067 TGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC 19126
||| || ||||| ||||| ||| | ||||| ||| | || || || | || | |
Sbjct 188540 TGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAAGAGGT 188599
Query 19127 AGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186
||| ||| | |||| ||||| ||||||| | || ||||| || |||||| |||||
Sbjct 188600 AGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGTAATCA 188659
Query 19187 TATAGA 19192
||| ||
Sbjct 188660 TATTGA 188665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399478968702345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |