Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5094 82.4 6e-11 >seq5094 Length=366253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 203/306 (66%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 18889 AAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTT 18948 ||| ||| || || || ||||| | || ||||| ||||||||||| || | | Sbjct 188362 AAAATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAAGTGCCT 188421 Query 18949 GGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATG--TCAGTT 19006 |||||||| | || || |||| ||| ||||| ||| || || ||| ||| || Sbjct 188422 GGAATCCAGAAGACATTGGAAGTATGGCACTCCCTCCGTGT--CATGTAATGTTTCAATT 188479 Query 19007 TTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCT 19066 ||||||| |||| || | ||||| | || ||| | || || || ||| Sbjct 188480 TTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCT 188539 Query 19067 TGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC 19126 ||| || ||||| ||||| ||| | ||||| ||| | || || || | || | | Sbjct 188540 TGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAAGAGGT 188599 Query 19127 AGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 ||| ||| | |||| ||||| ||||||| | || ||||| || |||||| ||||| Sbjct 188600 AGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGTAATCA 188659 Query 19187 TATAGA 19192 ||| || Sbjct 188660 TATTGA 188665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399478968702345