Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 309 4e-79
>seq4765
Length=3541379
Score = 309 bits (342), Expect = 4e-79
Identities = 1203/1879 (64%), Gaps = 44/1879 (2%)
Strand=Plus/Minus
Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857
|||||| | ||||| || |||| | || || || ||||| || || || ||||| ||
Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742
Query 52858 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916
||||| || || || || ||| |||||| || || ||| || ||| ||| | |
Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683
Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976
| || || | ||| || || | |||||||| |||||||| || || || | ||||| |
Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623
Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035
||||||| ||| | | || | || ||||||| || || || | |||| || |
Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564
Query 53036 TCTTCTGGAAGGT--TTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092
| | |||| | | | ||||||| ||||| |||| || ||| |||||
Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504
Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152
|| ||||||| ||| || | ||| |||| | | | | || || | || || ||
Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444
Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212
|| ||||| || || | || | || || || ||||| |||| ||||| || | ||
Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384
Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272
|| || || |||| || || ||||| ||||| || ||||| || ||||| | | |
Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324
Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332
||||||| |||| | | |||| || || || | |||| | ||| || | ||
Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264
Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 53392
||||| || || || || || || || || | ||
Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204
Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452
|| || || || ||||| || || ||||||||||| || || | || || |||||
Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144
Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 53512
|| ||||| ||||||| | ||| || || ||| ||| || | || | |
Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084
Query 53513 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572
| ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| ||
Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024
Query 53573 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630
|| || |||| || || || | |||||||| || || || ||||| || || || |
Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966
Query 53631 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT- 53689
| || | | ||| || |||||||| || |||||| || | ||| ||
Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATC-----GTACGTCTTTTC 3009911
Query 53690 -------ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742
||||||||||| | || || || ||||| || || ||||| | ||| | |
Sbjct 3009910 GGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGG 3009851
Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802
| || | | || || ||||| ||||| || ||||||||||| || | ||| ||
Sbjct 3009850 CGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTG 3009791
Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862
||||| ||||| |||| ||||||||||| | || ||| | || | ||||| || |
Sbjct 3009790 CTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCAC 3009731
Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTAT-AGATTTGTATCTCT 53921
||| | || || || || ||| | | ||||||| | | | |||| | |
Sbjct 3009730 CTGCGCCTCGATGATGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTGG-----CC 3009676
Query 53922 TTTCTCT----TTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975
|||| || ||||| || ||| | || ||||||||||| ||||| |||| |
Sbjct 3009675 TTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCT 3009618
Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035
|| || ||||| | | ||| ||||| | ||||| | | | | ||| || || |
Sbjct 3009617 GCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCT 3009558
Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 54094
||||||||||||| || ||||| || || ||| |||||||| | | | || |||||
Sbjct 3009557 TCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499
Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154
|| || || |||||||| || || | |||| | | | ||| || ||||| || |||||
Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439
Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214
|| |||| | | || ||||| ||| || ||||| || | ||| | ||| ||
Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379
Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274
|| | |||| || ||| |||| | |||||||| | ||||| || || | || |
Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319
Query 54275 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332
| || ||||||| || | | ||| || || || || || ||| || ||||
Sbjct 3009318 GTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGA 3009261
Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392
| | || || ||| | || | | | ||||| || || ||| ||||| | |
Sbjct 3009260 TCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCA 3009201
Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452
| || || ||| || | || | || | || | || || | ||| || || |
Sbjct 3009200 GGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGG 3009141
Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512
|||| || || | || || | | |||||| ||||| | ||| | || || ||
Sbjct 3009140 CGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTT 3009081
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
||| ||||| | || || ||||| | ||||||||| || | || | |||||
Sbjct 3009080 CACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTAC 3009021
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632
|||| | |||||||| || || |||| || || |||||||| || || || ||
Sbjct 3009020 CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAA 3008961
Query 54633 AGTCTCGTTCGTAAATAAT 54651
|||| || |||||||| ||
Sbjct 3008960 AGTCGCGATCGTAAATTAT 3008942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593683445965680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |