Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4765 309 4e-79 >seq4765 Length=3541379 Score = 309 bits (342), Expect = 4e-79 Identities = 1203/1879 (64%), Gaps = 44/1879 (2%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||| | ||||| || |||| | || || || ||||| || || || ||||| || Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742 Query 52858 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 ||||| || || || || ||| |||||| || || ||| || ||| ||| | | Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | || || | ||| || || | |||||||| |||||||| || || || | ||||| | Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035 ||||||| ||| | | || | || ||||||| || || || | |||| || | Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564 Query 53036 TCTTCTGGAAGGT--TTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 | | |||| | | | ||||||| ||||| |||| || ||| ||||| Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || ||||||| ||| || | ||| |||| | | | | || || | || || || Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || ||||| || || | || | || || || ||||| |||| ||||| || | || Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || || || |||| || || ||||| ||||| || ||||| || ||||| | | | Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 ||||||| |||| | | |||| || || || | |||| | ||| || | || Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 53392 ||||| || || || || || || || || | || Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || || || || ||||| || || ||||||||||| || || | || || ||||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 53512 || ||||| ||||||| | ||| || || ||| ||| || | || | | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084 Query 53513 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572 | ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| || Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024 Query 53573 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 || || |||| || || || | |||||||| || || || ||||| || || || | Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966 Query 53631 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT- 53689 | || | | ||| || |||||||| || |||||| || | ||| || Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATC-----GTACGTCTTTTC 3009911 Query 53690 -------ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 ||||||||||| | || || || ||||| || || ||||| | ||| | | Sbjct 3009910 GGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGG 3009851 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 | || | | || || ||||| ||||| || ||||||||||| || | ||| || Sbjct 3009850 CGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTG 3009791 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| ||||| |||| ||||||||||| | || ||| | || | ||||| || | Sbjct 3009790 CTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCAC 3009731 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTAT-AGATTTGTATCTCT 53921 ||| | || || || || ||| | | ||||||| | | | |||| | | Sbjct 3009730 CTGCGCCTCGATGATGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTGG-----CC 3009676 Query 53922 TTTCTCT----TTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 |||| || ||||| || ||| | || ||||||||||| ||||| |||| | Sbjct 3009675 TTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCT 3009618 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 || || ||||| | | ||| ||||| | ||||| | | | | ||| || || | Sbjct 3009617 GCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCT 3009558 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 54094 ||||||||||||| || ||||| || || ||| |||||||| | | | || ||||| Sbjct 3009557 TCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || || || |||||||| || || | |||| | | | ||| || ||||| || ||||| Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | || ||||| ||| || ||||| || | ||| | ||| || Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || | |||| || ||| |||| | |||||||| | ||||| || || | || | Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319 Query 54275 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | || ||||||| || | | ||| || || || || || ||| || |||| Sbjct 3009318 GTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGA 3009261 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | | || || ||| | || | | | ||||| || || ||| ||||| | | Sbjct 3009260 TCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCA 3009201 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 | || || ||| || | || | || | || | || || | ||| || || | Sbjct 3009200 GGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGG 3009141 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 |||| || || | || || | | |||||| ||||| | ||| | || || || Sbjct 3009140 CGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTT 3009081 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 ||| ||||| | || || ||||| | ||||||||| || | || | ||||| Sbjct 3009080 CACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTAC 3009021 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 |||| | |||||||| || || |||| || || |||||||| || || || || Sbjct 3009020 CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAA 3008961 Query 54633 AGTCTCGTTCGTAAATAAT 54651 |||| || |||||||| || Sbjct 3008960 AGTCGCGATCGTAAATTAT 3008942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593683445965680