Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4761 219 5e-52 >seq4761 Length=1439414 Score = 219 bits (242), Expect = 5e-52 Identities = 561/846 (66%), Gaps = 35/846 (4%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||| ||||| |||| | || ||| | ||| | | | | |||||||| Sbjct 1350080 TAAACGGCCATTTCCATCTGGATTTTTGGGTAGGGATTGTAATCGACTATCTCAAAGTCC 1350139 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGC 145656 || || ||||| || ||||||| |||| | | |||| ||| ||||||| || Sbjct 1350140 TCAAACCGAAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGA 1350199 Query 145657 CGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCG 145716 || || | | |||||| |||||| || ||||| || || |||||||| || ||| Sbjct 1350200 CGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCG 1350259 Query 145717 TCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG 145776 || |||| | || | ||||| || |||| || || || | ||||| | ||||| | Sbjct 1350260 TCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGG 1350319 Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 || ||||||| ||| ||| |||||||| ||||| ||||| |||||||| | | | Sbjct 1350320 GTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTC 1350379 Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCC---GCCC---GCCACGTAGAACTGGCACAGGAGG 145890 ||||||||||| ||||| | ||| || | || | ||| ||||||| |||| | Sbjct 1350380 TGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAG 1350439 Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950 || || |||||||| ||||| || | ||| || ||||| |||| | || || Sbjct 1350440 TGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATG 1350499 Query 145951 CTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010 | |||| | || || |||| ||| | | |||| | | |||||||| | |||| Sbjct 1350500 CGCCTGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCC 1350559 Query 146011 TGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAA 146069 || || | ||| || ||| | | || ||| | ||||| ||||||| ||||||||| Sbjct 1350560 TGGCCGCTGTAGTC-GTCGTCGCAGGTGCGATACTCTGCCCCAAAGTGCCGCCACTGGAA 1350618 Query 146070 CCCGTAGACGGGCCCCAGGTCCCCG------GGCTCCCTGTGCCCCAGCCCGGCCCGGGC 146123 ||||| || || |||| || ||| ||||| |||| |||||| | || Sbjct 1350619 GCCGTATACCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCCCAGCTTGTCC----- 1350673 Query 146124 GAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC--GGAG-AGCTC 146180 ||| | |||| || | ||| | ||||| || | ||| | || |||| ||| Sbjct 1350674 -AGGTACTCCCTGGTGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAGAAGC-- 1350730 Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 |||| |||||| || || ||||| || ||||| ||| || | | |||| Sbjct 1350731 -TTGGCGTCCGTCTTACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCGGAAGAA 1350789 Query 146241 GACCCTCTTGGTGGTCAGCAGGGG---GAACTGGCCCCGCA---GGGAGTACTTGGCCTG 146294 ||| | |||||||||||||||||| | ||| ||| |||| | || | | || Sbjct 1350790 GACACGCTTGGTGGTCAGCAGGGGAAAGGACTCGCCGCGCATATTGAAGCGCAT---TTG 1350846 Query 146295 GTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGC 146354 | | ||||| |||||||| || ||||| || | ||| ||| || | |||||||| Sbjct 1350847 GGCACCGAACACGGACAGTGTTCCCACCTGTGTACGGTCTATCCTACGTTCTCCGTTCGC 1350906 Query 146355 CAGGAT 146360 | ||| Sbjct 1350907 TATGAT 1350912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590038880189640